Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30137
         (705 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53834| Best HMM Match : Cecropin (HMM E-Value=9.6)                  30   2.1  
SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)                   29   4.9  
SB_35438| Best HMM Match : GXGXG (HMM E-Value=1.9)                     29   4.9  
SB_13667| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_25662| Best HMM Match : HLH (HMM E-Value=2.3e-14)                   28   6.4  

>SB_53834| Best HMM Match : Cecropin (HMM E-Value=9.6)
          Length = 84

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 460 YKFRTTYGGSVCGVTTALGRKS*PMTVQLAISDVKAYYINSLIS 329
           Y  +  YGG V    T LGRK    T + A+ DV +  +++ IS
Sbjct: 18  YVLKHIYGGGVFDSITNLGRKVFGKTAKKAVKDVTSKAVSTAIS 61


>SB_13463| Best HMM Match : RVT_1 (HMM E-Value=0.044)
          Length = 537

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 56  IVTF*LINHFYIISSCTDFDVQIFVYLST 142
           +V F L+ HF+++S+  DF  + F  LST
Sbjct: 86  VVRFRLLQHFHVLSTGVDFSDRHFYVLST 114


>SB_35438| Best HMM Match : GXGXG (HMM E-Value=1.9)
          Length = 602

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -3

Query: 460 YKFRTTYGGSVCGVTTALGRKS*PMTVQLAISDVKAYYINSLIS 329
           Y  +  YGG V    T LGRK    T + AI D  +  +++ +S
Sbjct: 157 YVLKHIYGGGVFDSITNLGRKIFAKTAKKAIKDATSKAVSTAVS 200


>SB_13667| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 106

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 251 NILMSLLVSSKLSTVFHGYLLRYYIVIV 168
           N  +SL +S     V+HGY++ YY++ V
Sbjct: 27  NRFLSLGLSQTFLAVWHGYMIGYYLLFV 54


>SB_25662| Best HMM Match : HLH (HMM E-Value=2.3e-14)
          Length = 468

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +1

Query: 214 DSFEDTSKDINIFWHSKMQIQKQQEKDMRERPTRHT*SRILMN 342
           D+F+  S + +I  H  +    Q+EKD++E P + T  R   N
Sbjct: 101 DAFKGLSYERSIRGHPDVDSFNQEEKDVKEEPVKVTRRRTTRN 143


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,975,751
Number of Sequences: 59808
Number of extensions: 318815
Number of successful extensions: 602
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)