Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30136
(710 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5602| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06
SB_49647| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 6e-06
SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59) 43 2e-04
SB_29359| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.002
SB_30216| Best HMM Match : TIL (HMM E-Value=3.1) 38 0.008
SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_6863| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.008
SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1) 36 0.043
SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.057
SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.30
SB_53289| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0) 29 4.9
SB_55533| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_23401| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.5
SB_59554| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
SB_36994| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_5602| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 50.4 bits (115), Expect = 1e-06
Identities = 25/43 (58%), Positives = 28/43 (65%)
Frame = +2
Query: 581 KAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVPRTSLPKQPA 709
+ +RS D KGVG S QQDGGHGS NPL+ T LPKQ A
Sbjct: 10 RCQSRRSSDPTKGVGCSRQQDGGHGSWNPLKECVTTPLPKQLA 52
>SB_49647| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 126
Score = 48.4 bits (110), Expect = 6e-06
Identities = 24/43 (55%), Positives = 27/43 (62%)
Frame = +2
Query: 581 KAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVPRTSLPKQPA 709
+ +RS D KGVG S QQDGGHGS NP + T LPKQ A
Sbjct: 10 RCQSRRSSDPTKGVGCSRQQDGGHGSWNPAKECVTTHLPKQLA 52
>SB_35257| Best HMM Match : Sec8_exocyst (HMM E-Value=0.59)
Length = 1060
Score = 43.2 bits (97), Expect = 2e-04
Identities = 21/35 (60%), Positives = 23/35 (65%)
Frame = +2
Query: 581 KAPKKRSWDTMKGVGRS*QQDGGHGSRNPLRSVPR 685
+ +RS D KGVG S QQDGGHGS NPLR R
Sbjct: 10 RCQSRRSSDPTKGVGCSRQQDGGHGSWNPLRKGQR 44
>SB_29359| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 33
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/25 (80%), Positives = 21/25 (84%)
Frame = +3
Query: 594 NAHGTP*KALVAHDSRTVAMEVGIR 668
+AH TP K LVA DSRTVAMEVGIR
Sbjct: 9 DAHQTPQKVLVALDSRTVAMEVGIR 33
>SB_30216| Best HMM Match : TIL (HMM E-Value=3.1)
Length = 212
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 634 TAGRWPWKSESAKEC 678
TAGRWPWK ESAKEC
Sbjct: 1 TAGRWPWKLESAKEC 15
>SB_14965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 634 TAGRWPWKSESAKEC 678
TAGRWPWK ESAKEC
Sbjct: 1 TAGRWPWKLESAKEC 15
>SB_6863| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 182
Score = 37.9 bits (84), Expect = 0.008
Identities = 14/15 (93%), Positives = 14/15 (93%)
Frame = +1
Query: 634 TAGRWPWKSESAKEC 678
TAGRWPWK ESAKEC
Sbjct: 80 TAGRWPWKLESAKEC 94
>SB_20402| Best HMM Match : Transformer (HMM E-Value=2.1)
Length = 276
Score = 35.5 bits (78), Expect = 0.043
Identities = 19/35 (54%), Positives = 23/35 (65%)
Frame = -2
Query: 553 ASSAYQNWPTWHRHQSPASSFE*AGVLTHLKFENR 449
ASS YQN PT R P + + G+LT+LKFENR
Sbjct: 84 ASSGYQNGPTRTRIHCPGFNKQ-VGLLTNLKFENR 117
>SB_13467| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 38
Score = 35.1 bits (77), Expect = 0.057
Identities = 15/21 (71%), Positives = 16/21 (76%)
Frame = -3
Query: 249 FPLTST*PGIVHHLSGPSICA 187
FPL S GIVHHLSGP+ CA
Sbjct: 9 FPLASPYSGIVHHLSGPNRCA 29
>SB_7775| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 112
Score = 33.9 bits (74), Expect = 0.13
Identities = 16/23 (69%), Positives = 17/23 (73%)
Frame = -2
Query: 253 RVSPDFDLTRHSSPSFGSQHLCS 185
RVS F L RHSSPSFGSQ + S
Sbjct: 42 RVSSGFTLFRHSSPSFGSQQMRS 64
>SB_48730| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 178
Score = 32.7 bits (71), Expect = 0.30
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = -2
Query: 322 ISLSPLYPVPTIDLHVR 272
ISLSPLYP TIDLHVR
Sbjct: 38 ISLSPLYPNLTIDLHVR 54
>SB_53289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 100
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = +2
Query: 635 QQDGGHGSRNPLRSVPRTSLPKQPA 709
QQDGGHG + T LPKQ A
Sbjct: 2 QQDGGHGKLESAKECVTTHLPKQLA 26
>SB_36687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1115
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +3
Query: 225 LVRSKSGETLWRTVA--ILTCKSIVGTGYRG 311
L++SK E +W +LTC S +GTG RG
Sbjct: 603 LIKSKGYEFMWNEHLGYVLTCPSNLGTGLRG 633
Score = 27.9 bits (59), Expect = 8.6
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +3
Query: 228 VRSKSGETLWRTVA--ILTCKSIVGTGYRG 311
++SK E +W +LTC S +GTG RG
Sbjct: 235 IKSKGREFMWNKHLGYVLTCPSNLGTGLRG 264
>SB_37973| Best HMM Match : ABC_tran (HMM E-Value=0)
Length = 3369
Score = 28.7 bits (61), Expect = 4.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = -1
Query: 677 HSLADSDFHGHRPAVMSDQRLSWCPMSVF 591
H + ++DF G R A+M+D +L C S+F
Sbjct: 389 HFMDEADFLGDRIAIMADGQLRCCGSSLF 417
>SB_55533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 44
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 693 SEVLGTLLSGFRLPWPPSCCHE 628
+E+L L+SGFRL PP C E
Sbjct: 9 NELLSMLMSGFRLSRPPLCPEE 30
>SB_23401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 380
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 693 SEVLGTLLSGFRLPWPPSCCHE 628
+E+L L+SGFRL PP C E
Sbjct: 303 NELLSMLMSGFRLSRPPLCPEE 324
>SB_59554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1247
Score = 27.9 bits (59), Expect = 8.6
Identities = 22/75 (29%), Positives = 31/75 (41%)
Frame = -3
Query: 588 GALEYVWFIPTAPVLLTKIGPLGTVISLRLHRSSKPEFSPI*SLRIG*GRFGPNASNHSL 409
G ++Y WF P LTK G LG RLHRS + + ++ G P A ++
Sbjct: 366 GGVQYSWFAPPKGEGLTKAG-LG-----RLHRSVEAFVYTVLGAQVNVGSSIPGAGGPAM 419
Query: 408 YRMRLF*NFISTPAI 364
F + P I
Sbjct: 420 EAQAEFTKLLQNPII 434
>SB_36994| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 618
Score = 27.9 bits (59), Expect = 8.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +3
Query: 195 CWDPKDGELCLVRSKSGETLWR 260
C KD +LC+ ++G TLWR
Sbjct: 589 CCSCKDYDLCIFGRRAGNTLWR 610
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,805,358
Number of Sequences: 59808
Number of extensions: 496421
Number of successful extensions: 1271
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1270
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -