Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30135
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       77   2e-16
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    28   0.10 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    23   2.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.0  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 77.0 bits (181), Expect = 2e-16
 Identities = 37/84 (44%), Positives = 49/84 (58%)
 Frame = +1

Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
           ++++PTREL  QI Q    F   S ++    +GG     Q   L  G  I++ATPGRL+D
Sbjct: 277 VIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVMHQRGKLSAGCHILVATPGRLLD 336

Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
           F+EKG        +LVLDEADRML
Sbjct: 337 FVEKGRVKFSSVQFLVLDEADRML 360



 Score = 64.9 bits (151), Expect = 7e-13
 Identities = 61/222 (27%), Positives = 95/222 (42%), Gaps = 10/222 (4%)
 Frame = +3

Query: 3   GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAKR 182
           G  V  PI+ FE A   + V   +K  GYK+PTP+Q    PI M+G++L+  A+    K 
Sbjct: 188 GDNVPQPIESFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKT 247

Query: 183 WPTSCQPLCT*ITNRLFGEVMVRLFGLGAYQRVSTTNSAS------CCRFWTHILCS*HV 344
                 P+   +  R    V+   +       VS T   +        +F  + +    V
Sbjct: 248 -AAFAVPIINTLLERSVDLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVV 306

Query: 345 CVWWCS*KRASPGLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHIFSS**G*SYVGMGFEP 524
                S       L  G          +  F+ KG  + ++V           + MGF P
Sbjct: 307 AYGGTSVMHQRGKLSAGCHILVATPGRLLDFVEKGRVKFSSVQFLVLDEADRMLDMGFLP 366

Query: 525 QIRKII--EQIRP--DRQTLMWSATWPKEVKKLAEDYLGDYI 638
            I K++  E + P  +RQTLM+SAT+P EV+ LA  +L +Y+
Sbjct: 367 SIEKMVDHETMVPLGERQTLMFSATFPDEVQHLARRFLNNYL 408



 Score = 25.4 bits (53), Expect = 0.55
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +2

Query: 158 SQTGSGKTLAYILPAI 205
           +QTGSGKT A+ +P I
Sbjct: 240 AQTGSGKTAAFAVPII 255


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 27.9 bits (59), Expect = 0.10
 Identities = 13/51 (25%), Positives = 25/51 (49%)
 Frame = -2

Query: 346 HTCYEHKMCVQNLQQLAEFVVLTLW*APRPNNRTITSPNRRLVIYVHNGWQ 194
           H+ +EH    +++Q++  +    +W   R  N T   PN  L ++  + WQ
Sbjct: 124 HSSHEHPWFKKSVQRIKPYDEYYVWRDARIVNGTRQPPNNWLSVFWGSAWQ 174


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +1

Query: 673 KSQHSSNCRYLSRTLKKE 726
           K +HS+   Y+SR L+KE
Sbjct: 448 KVKHSATLGYISRVLEKE 465


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = +1

Query: 427 LIDFLEKGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSLSKY 552
           ++ FL++      +   ++  +  RML+ DL  K  KSL  +
Sbjct: 343 ILKFLKQKYVKNSKLEKVIKHDILRMLIIDLRKKQLKSLEDW 384


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 216,939
Number of Sequences: 438
Number of extensions: 5091
Number of successful extensions: 15
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)