Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30135
(728 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 126 1e-29
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 123 1e-28
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 123 1e-28
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 109 1e-24
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 109 1e-24
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 109 1e-24
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 103 2e-22
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 103 2e-22
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 93 1e-19
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 91 7e-19
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 90 1e-18
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 88 6e-18
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 88 6e-18
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 87 1e-17
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 87 1e-17
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 86 3e-17
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 86 3e-17
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 81 6e-16
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 80 2e-15
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 80 2e-15
At3g13920.1 68416.m01758 eukaryotic translation initiation facto... 74 8e-14
At1g72730.1 68414.m08410 eukaryotic translation initiation facto... 74 8e-14
At1g54270.1 68414.m06187 eukaryotic translation initiation facto... 73 3e-13
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 72 5e-13
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 71 6e-13
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 70 1e-12
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 70 1e-12
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 69 3e-12
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 68 6e-12
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 67 1e-11
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 67 1e-11
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 67 1e-11
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 67 1e-11
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 67 1e-11
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 65 4e-11
At3g19760.1 68416.m02501 eukaryotic translation initiation facto... 64 9e-11
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 64 1e-10
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 63 2e-10
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 62 3e-10
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 62 4e-10
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 61 6e-10
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 60 1e-09
At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18) 56 2e-08
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 56 2e-08
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 56 3e-08
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 54 1e-07
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 52 5e-07
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 50 2e-06
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 49 4e-06
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 48 5e-06
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 48 8e-06
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 47 1e-05
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 46 2e-05
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 45 4e-05
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 45 4e-05
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 43 2e-04
At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)... 43 2e-04
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 43 2e-04
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 41 7e-04
At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he... 40 0.002
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 39 0.003
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 33 0.19
At2g28600.1 68415.m03476 expressed protein 33 0.26
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 31 0.59
At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein lo... 29 3.2
At4g39080.1 68417.m05534 vacuolar proton ATPase, putative simila... 29 4.2
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 28 5.5
At1g15820.1 68414.m01898 chlorophyll A-B binding protein, chloro... 27 9.6
At1g11920.1 68414.m01376 pectate lyase family protein similar to... 27 9.6
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 126 bits (305), Expect = 1e-29
Identities = 63/104 (60%), Positives = 78/104 (75%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LVLAPTRELA QIQQ A+ FG +S ++ TC++GG PK Q RDL++GVEIVIATPGRLID
Sbjct: 176 LVLAPTRELAVQIQQEASKFGSSSKIKTTCIYGGVPKGPQVRDLQKGVEIVIATPGRLID 235
Query: 436 FLEKGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSLSKYAQTDR 567
+E TNL+R TYLVLDEADRML + + K +S + + DR
Sbjct: 236 MMESNNTNLRRVTYLVLDEADRMLDMGFDPQIRKIVS-HIRPDR 278
Score = 72.5 bits (170), Expect = 3e-13
Identities = 27/54 (50%), Positives = 41/54 (75%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G ++ P++ F + FPDYV + VK G+ EPTPIQ+QGWP+AM G++L+G+A+
Sbjct: 91 GKDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPTPIQSQGWPMAMKGRDLIGIAE 144
Score = 69.3 bits (162), Expect = 2e-12
Identities = 28/39 (71%), Positives = 35/39 (89%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 626
MGF+PQIRKI+ IRPDRQTL WSATWPKEV++L++ +L
Sbjct: 261 MGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFL 299
Score = 56.4 bits (130), Expect = 2e-08
Identities = 23/33 (69%), Positives = 29/33 (87%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIV 256
++TGSGKTL+Y+LPAIVH+N QP + GDGPIV
Sbjct: 143 AETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIV 175
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 123 bits (297), Expect = 1e-28
Identities = 73/146 (50%), Positives = 89/146 (60%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Query: 436 FLEKGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSLSKYAQTDRL*CGQLLGPKK*RNLL 615
LE TNL+R TYLVLDEADRML + K +S+ + P++ L
Sbjct: 302 MLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLA 361
Query: 616 RITWEITFRFHIGSLPLFRKSQHSSN 693
R ++ IGS L K+ S N
Sbjct: 362 RQFLRDPYKAIIGSTDL--KANQSIN 385
Score = 72.1 bits (169), Expect = 3e-13
Identities = 26/54 (48%), Positives = 43/54 (79%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+G+A+
Sbjct: 157 GRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/33 (63%), Positives = 29/33 (87%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIV 256
++TGSGKTLAY+LPA+VH++ QP + + DGPIV
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIV 241
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 123 bits (297), Expect = 1e-28
Identities = 73/146 (50%), Positives = 89/146 (60%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L+LAPTRELA QIQ+ + FG S VR+TC++GGAPK Q RDL RGVEIVIATPGRLID
Sbjct: 242 LILAPTRELAVQIQEESRKFGLRSGVRSTCIYGGAPKGPQIRDLRRGVEIVIATPGRLID 301
Query: 436 FLEKGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSLSKYAQTDRL*CGQLLGPKK*RNLL 615
LE TNL+R TYLVLDEADRML + K +S+ + P++ L
Sbjct: 302 MLECQHTNLKRVTYLVLDEADRMLDMGFEPQIRKIVSQIRPDRQTLLWSATWPREVETLA 361
Query: 616 RITWEITFRFHIGSLPLFRKSQHSSN 693
R ++ IGS L K+ S N
Sbjct: 362 RQFLRDPYKAIIGSTDL--KANQSIN 385
Score = 72.1 bits (169), Expect = 3e-13
Identities = 26/54 (48%), Positives = 43/54 (79%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G +V P++ F++ANFPD + + + +G+ EPTPIQAQGWP+A+ G++L+G+A+
Sbjct: 157 GRDVPKPMKMFQDANFPDNILEAIAKLGFTEPTPIQAQGWPMALKGRDLIGIAE 210
Score = 52.0 bits (119), Expect = 4e-07
Identities = 21/33 (63%), Positives = 29/33 (87%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPIV 256
++TGSGKTLAY+LPA+VH++ QP + + DGPIV
Sbjct: 209 AETGSGKTLAYLLPALVHVSAQPRLGQDDGPIV 241
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 109 bits (263), Expect = 1e-24
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
LE +L++ +YLVLDEADRML
Sbjct: 294 ILEMRRISLRQISYLVLDEADRML 317
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/45 (60%), Positives = 36/45 (80%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
MGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L + Q+
Sbjct: 319 MGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V +AK
Sbjct: 150 GGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHI 214
++TGSGKTL Y++P +H+
Sbjct: 202 AKTGSGKTLGYLIPGFLHL 220
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 109 bits (263), Expect = 1e-24
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
LE +L++ +YLVLDEADRML
Sbjct: 294 ILEMRRISLRQISYLVLDEADRML 317
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/45 (60%), Positives = 36/45 (80%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
MGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L + Q+
Sbjct: 319 MGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V +AK
Sbjct: 150 GGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHI 214
++TGSGKTL Y++P +H+
Sbjct: 202 AKTGSGKTLGYLIPGFLHL 220
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 109 bits (263), Expect = 1e-24
Identities = 53/84 (63%), Positives = 65/84 (77%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LVL+PTRELA QIQ+ A FG +S + TC++GGAPK Q RDLERG +IV+ATPGRL D
Sbjct: 234 LVLSPTRELATQIQEEAVKFGRSSRISCTCLYGGAPKGPQLRDLERGADIVVATPGRLND 293
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
LE +L++ +YLVLDEADRML
Sbjct: 294 ILEMRRISLRQISYLVLDEADRML 317
Score = 61.3 bits (142), Expect = 6e-10
Identities = 27/45 (60%), Positives = 36/45 (80%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
MGFEPQIRKI+++I RQTLM++ATWPK V+K+A D L + Q+
Sbjct: 319 MGFEPQIRKIVKEIPTKRQTLMYTATWPKGVRKIAADLLVNPAQV 363
Score = 58.4 bits (135), Expect = 5e-09
Identities = 25/54 (46%), Positives = 35/54 (64%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G +V P+ FE FP + + V + G+ PTPIQAQ WPIAM G+++V +AK
Sbjct: 150 GGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPIQAQSWPIAMQGRDIVAIAK 203
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHI 214
++TGSGKTL Y++P +H+
Sbjct: 202 AKTGSGKTLGYLIPGFLHL 220
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 103 bits (246), Expect = 2e-22
Identities = 50/84 (59%), Positives = 63/84 (75%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LVL+PTRELA QIQ A FG +S + C++GGAPK Q +++ERGV+IV+ATPGRL D
Sbjct: 305 LVLSPTRELATQIQVEALKFGKSSKISCACLYGGAPKGPQLKEIERGVDIVVATPGRLND 364
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
LE +L + +YLVLDEADRML
Sbjct: 365 ILEMKRISLHQVSYLVLDEADRML 388
Score = 63.3 bits (147), Expect = 2e-10
Identities = 27/45 (60%), Positives = 36/45 (80%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
MGFEPQIRKI+ ++ RQTLM++ATWPKEV+K+A D L + Q+
Sbjct: 390 MGFEPQIRKIVNEVPTKRQTLMYTATWPKEVRKIAADLLVNPAQV 434
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/31 (51%), Positives = 23/31 (74%)
Frame = +3
Query: 72 VKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
V + G+ P+PIQAQ WPIAM +++V +AK
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274
Score = 30.7 bits (66), Expect = 1.0
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHI 214
++TGSGKTL Y++P +H+
Sbjct: 273 AKTGSGKTLGYLIPGFMHL 291
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 103 bits (246), Expect = 2e-22
Identities = 50/84 (59%), Positives = 62/84 (73%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L+LAPTRELA QIQ A FG +S + TC++GGAPK Q ++LERG +IV+ATPGRL D
Sbjct: 511 LILAPTRELATQIQDEALRFGRSSRISCTCLYGGAPKGPQLKELERGADIVVATPGRLND 570
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
LE + Q+ + LVLDEADRML
Sbjct: 571 ILEMKMIDFQQVSLLVLDEADRML 594
Score = 68.5 bits (160), Expect = 4e-12
Identities = 29/45 (64%), Positives = 38/45 (84%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
MGFEPQIRKI+ +I P RQTLM++ATWPKEV+K+A D L + +Q+
Sbjct: 596 MGFEPQIRKIVNEIPPRRQTLMYTATWPKEVRKIASDLLVNPVQV 640
Score = 48.8 bits (111), Expect = 4e-06
Identities = 20/54 (37%), Positives = 32/54 (59%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G + P FE + P + + + + G+ PTPIQAQ WPIA+ +++V +AK
Sbjct: 427 GENIPAPYITFESSGLPPEILRELLSAGFPSPTPIQAQTWPIALQSRDIVAIAK 480
Score = 29.1 bits (62), Expect = 3.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIV 208
++TGSGKTL Y++PA +
Sbjct: 479 AKTGSGKTLGYLIPAFI 495
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 93.5 bits (222), Expect = 1e-19
Identities = 44/84 (52%), Positives = 59/84 (70%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV+I++ATPGRL D
Sbjct: 228 VILSPTRELACQIHDEARKFSYQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLND 287
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
LE+G +LQ +L LDEADRML
Sbjct: 288 LLERGRVSLQMVRFLALDEADRML 311
Score = 56.8 bits (131), Expect = 1e-08
Identities = 31/75 (41%), Positives = 48/75 (64%), Gaps = 4/75 (5%)
Frame = +3
Query: 426 IN*FLGKGHNQLTAVHIFSS**G*SYVGMGFEPQIRKIIEQI-RPD---RQTLMWSATWP 593
+N L +G L V + + MGFEPQIRKI++Q+ P RQT+++SAT+P
Sbjct: 285 LNDLLERGRVSLQMVRFLALDEADRMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFP 344
Query: 594 KEVKKLAEDYLGDYI 638
+E+++LA D+L +YI
Sbjct: 345 REIQRLASDFLSNYI 359
Score = 34.3 bits (75), Expect = 0.084
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G V P+ F E + + + ++ Y +PTP+Q PI +G++L+ A+
Sbjct: 138 GDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMACAQ 191
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHINNQPPIRRGDG 247
+QTGSGKT A+ P I I I R G
Sbjct: 190 AQTGSGKTAAFCFPIISGIMKDQHIERPRG 219
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 91.1 bits (216), Expect = 7e-19
Identities = 42/84 (50%), Positives = 58/84 (69%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
++L+PTRELA QI A F + + V+ +GG P +Q R+LERGV+I++ATPGRL D
Sbjct: 241 VILSPTRELASQIHDEAKKFSYQTGVKVVVAYGGTPINQQLRELERGVDILVATPGRLND 300
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
LE+ ++Q +L LDEADRML
Sbjct: 301 LLERARVSMQMIRFLALDEADRML 324
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/47 (59%), Positives = 39/47 (82%), Gaps = 4/47 (8%)
Frame = +3
Query: 510 MGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYI 638
MGFEPQIRKI+EQ+ R RQTL++SAT+P+E+++LA D+L +YI
Sbjct: 326 MGFEPQIRKIVEQMDMPPRGVRQTLLFSATFPREIQRLAADFLANYI 372
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G V P+ F E + + + ++ Y +PTP+Q PI + G++L+ A+
Sbjct: 151 GDNVPPPVNTFAEIDLGEALNLNIRRCKYVKPTPVQRHAIPILLEGRDLMACAQ 204
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHINNQPPIRRGDG 247
+QTGSGKT A+ P I I ++R G
Sbjct: 203 AQTGSGKTAAFCFPIISGIMKDQHVQRPRG 232
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 90.2 bits (214), Expect = 1e-18
Identities = 45/84 (53%), Positives = 56/84 (66%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
+V+APTRELAQQI++ F H R T + GG EQ + +G EIVIATPGRLID
Sbjct: 393 VVMAPTRELAQQIEEETVKFAHYLGFRVTSIVGGQSIEEQGLKITQGCEIVIATPGRLID 452
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
LE+ L +C Y+VLDEADRM+
Sbjct: 453 CLERRYAVLNQCNYVVLDEADRMI 476
Score = 41.1 bits (92), Expect = 7e-04
Identities = 15/54 (27%), Positives = 33/54 (61%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G + P++ +EE+ + + V+ GYK+P+PIQ P+ + ++++G+A+
Sbjct: 305 GSRIPRPMRSWEESKLTSELLKAVERAGYKKPSPIQMAAIPLGLQQRDVIGIAE 358
Score = 34.3 bits (75), Expect = 0.084
Identities = 12/25 (48%), Positives = 20/25 (80%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHINNQPPI 232
++TGSGKT A++LP + +I+ PP+
Sbjct: 357 AETGSGKTAAFVLPMLAYISRLPPM 381
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 87.8 bits (208), Expect = 6e-18
Identities = 41/84 (48%), Positives = 57/84 (67%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
++L+PTRELA QI A F + + V+ +GG P +Q R+LERG +I++ATPGRL D
Sbjct: 233 VILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLND 292
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
LE+ ++Q +L LDEADRML
Sbjct: 293 LLERARVSMQMIRFLALDEADRML 316
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/47 (53%), Positives = 38/47 (80%), Gaps = 4/47 (8%)
Frame = +3
Query: 510 MGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYI 638
MGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA D++ +YI
Sbjct: 318 MGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYI 364
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ A+
Sbjct: 143 GGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQ 196
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 87.8 bits (208), Expect = 6e-18
Identities = 41/84 (48%), Positives = 57/84 (67%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
++L+PTRELA QI A F + + V+ +GG P +Q R+LERG +I++ATPGRL D
Sbjct: 233 VILSPTRELACQIHDEAKKFSYQTGVKVVVAYGGTPIHQQLRELERGCDILVATPGRLND 292
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
LE+ ++Q +L LDEADRML
Sbjct: 293 LLERARVSMQMIRFLALDEADRML 316
Score = 55.6 bits (128), Expect = 3e-08
Identities = 25/47 (53%), Positives = 38/47 (80%), Gaps = 4/47 (8%)
Frame = +3
Query: 510 MGFEPQIRKIIEQI----RPDRQTLMWSATWPKEVKKLAEDYLGDYI 638
MGFEPQIRKI+EQ+ R RQT+++SAT+P ++++LA D++ +YI
Sbjct: 318 MGFEPQIRKIVEQMDMPPRGVRQTMLFSATFPSQIQRLAADFMSNYI 364
Score = 33.5 bits (73), Expect = 0.15
Identities = 14/54 (25%), Positives = 28/54 (51%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G +V P+ F + + D + ++ Y PTP+Q PI ++ ++L+ A+
Sbjct: 143 GGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAERDLMACAQ 196
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 87.0 bits (206), Expect = 1e-17
Identities = 42/85 (49%), Positives = 55/85 (64%)
Frame = +1
Query: 253 CLVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 432
CLVL+PTRELA QI V + G +++ CV+GG+ K Q + GV+IVI TPGRL
Sbjct: 194 CLVLSPTRELAVQISDVLREAGEPCGLKSICVYGGSSKGPQISAIRSGVDIVIGTPGRLR 253
Query: 433 DFLEKGTTNLQRCTYLVLDEADRML 507
D +E L +++VLDEADRML
Sbjct: 254 DLIESNVLRLSDVSFVVLDEADRML 278
Score = 44.8 bits (101), Expect = 6e-05
Identities = 18/47 (38%), Positives = 32/47 (68%)
Frame = +3
Query: 24 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
++ F E+N P+ V KT +++P+PIQ+ WP + G++L+G+AK
Sbjct: 115 LKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLLDGRDLIGIAK 159
Score = 43.6 bits (98), Expect = 1e-04
Identities = 18/39 (46%), Positives = 27/39 (69%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 626
MGFE +R I+ RQ +M+SATWP +V KLA++++
Sbjct: 280 MGFEEPVRFILSNTNKVRQMVMFSATWPLDVHKLAQEFM 318
Score = 31.9 bits (69), Expect = 0.45
Identities = 12/19 (63%), Positives = 18/19 (94%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHI 214
++TGSGKTLA+ +PAI+H+
Sbjct: 158 AKTGSGKTLAFGIPAIMHV 176
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 86.6 bits (205), Expect = 1e-17
Identities = 48/105 (45%), Positives = 66/105 (62%), Gaps = 1/105 (0%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
++ APTRELA QI A F +R + V+GG K EQ ++L+ G EIV+ATPGRLID
Sbjct: 305 VICAPTRELAHQIFLEAKKFSKAYGLRVSAVYGGMSKHEQFKELKAGCEIVVATPGRLID 364
Query: 436 FLEKGTTNLQRCTYLVLDEADRMLVWDLNHKSE-KSLSKYAQTDR 567
L+ + R +YLVLDEADRM +DL + + +S+ + DR
Sbjct: 365 MLKMKALTMMRASYLVLDEADRM--FDLGFEPQVRSIVGQIRPDR 407
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/45 (60%), Positives = 37/45 (82%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
+GFEPQ+R I+ QIRPDRQTL++SAT P +V+KLA + L D I++
Sbjct: 390 LGFEPQVRSIVGQIRPDRQTLLFSATMPWKVEKLAREILSDPIRV 434
Score = 58.4 bits (135), Expect = 5e-09
Identities = 21/54 (38%), Positives = 35/54 (64%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G +VH P++ FE+ F + +K Y++PT IQ Q PI +SG++++G+AK
Sbjct: 220 GFDVHRPVKTFEDCGFSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAK 273
Score = 47.6 bits (108), Expect = 8e-06
Identities = 19/32 (59%), Positives = 27/32 (84%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 253
++TGSGKT A++LP IVHI +QP ++R +GPI
Sbjct: 272 AKTGSGKTAAFVLPMIVHIMDQPELQRDEGPI 303
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 85.8 bits (203), Expect = 3e-17
Identities = 40/86 (46%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Frame = +1
Query: 253 CLVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVIATPGRL 429
CLVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R L+ GV++ + TPGR+
Sbjct: 181 CLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRQLDYGVDVAVGTPGRV 237
Query: 430 IDFLEKGTTNLQRCTYLVLDEADRML 507
ID +++G NL ++VLDEAD+ML
Sbjct: 238 IDLMKRGALNLSEVQFVVLDEADQML 263
Score = 35.5 bits (78), Expect = 0.036
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
+GF + I+E++ RQ++M+SAT P ++ L + YL + + +
Sbjct: 265 VGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTV 309
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 85.8 bits (203), Expect = 3e-17
Identities = 39/86 (45%), Positives = 62/86 (72%), Gaps = 1/86 (1%)
Frame = +1
Query: 253 CLVLAPTRELAQQIQQVAADFGHTSYVRNT-CVFGGAPKREQARDLERGVEIVIATPGRL 429
CLVLAPTRELA+Q+++ +F ++ +T C++GG P +Q R+L G+++ + TPGR+
Sbjct: 193 CLVLAPTRELARQVEK---EFRESAPSLDTICLYGGTPIGQQMRELNYGIDVAVGTPGRI 249
Query: 430 IDFLEKGTTNLQRCTYLVLDEADRML 507
ID +++G NL ++VLDEAD+ML
Sbjct: 250 IDLMKRGALNLSEVQFVVLDEADQML 275
Score = 34.7 bits (76), Expect = 0.064
Identities = 14/45 (31%), Positives = 28/45 (62%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
+GF + I++++ RQ++M+SAT P ++ L + YL + + I
Sbjct: 277 VGFAEDVEIILQKLPAKRQSMMFSATMPSWIRSLTKKYLNNPLTI 321
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 74 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 205
K G+++ + L + ++ R++TG+GKTLA+ +P I
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPII 175
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 81.4 bits (192), Expect = 6e-16
Identities = 44/86 (51%), Positives = 56/86 (65%), Gaps = 3/86 (3%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LV+APTREL QQI F +R V+GG+ +Q +L+RG EIV+ TPGR+ID
Sbjct: 606 LVMAPTRELVQQIHSDIRKFSKPLGIRCVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 665
Query: 436 FL--EKG-TTNLQRCTYLVLDEADRM 504
L G TNL+R T+LV+DEADRM
Sbjct: 666 ILCTSSGKITNLRRVTFLVMDEADRM 691
Score = 56.4 bits (130), Expect = 2e-08
Identities = 24/45 (53%), Positives = 36/45 (80%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
MGFEPQI +II+ IRP+RQT+++SAT+P++V+ LA L ++I
Sbjct: 694 MGFEPQITRIIQNIRPERQTVLFSATFPRQVETLARKVLNKPVEI 738
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 253
++TGSGKTL ++LP + HI +QPP+ GDGPI
Sbjct: 573 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPI 604
Score = 49.2 bits (112), Expect = 3e-06
Identities = 20/54 (37%), Positives = 33/54 (61%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G +V PI+++ + + +K + Y++P PIQ Q PI MSG++ +GVAK
Sbjct: 521 GKDVPRPIKFWHQTGLTSKILDTMKKLNYEKPMPIQTQALPIIMSGRDCIGVAK 574
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 79.8 bits (188), Expect = 2e-15
Identities = 40/84 (47%), Positives = 54/84 (64%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LVLAPTRELA+Q+++ + Y+ CV+GG Q L RGV++V+ TPGR+ID
Sbjct: 184 LVLAPTRELAKQVEKEIKE--SAPYLSTVCVYGGVSYTIQQSALTRGVDVVVGTPGRIID 241
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
+E + L YLVLDEAD+ML
Sbjct: 242 LIEGRSLKLGEVEYLVLDEADQML 265
Score = 42.3 bits (95), Expect = 3e-04
Identities = 19/47 (40%), Positives = 30/47 (63%)
Frame = +3
Query: 504 VGMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
+ +GFE + I+E + RQ++++SAT P VKKLA YL + + I
Sbjct: 265 LAVGFEEAVESILENLPTKRQSMLFSATMPTWVKKLARKYLDNPLNI 311
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 79.8 bits (188), Expect = 2e-15
Identities = 44/86 (51%), Positives = 55/86 (63%), Gaps = 3/86 (3%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LV+APTREL QQI F + V+GG+ +Q +L+RG EIV+ TPGR+ID
Sbjct: 473 LVMAPTRELVQQIYSDIRKFSKALGIICVPVYGGSGVAQQISELKRGTEIVVCTPGRMID 532
Query: 436 FL--EKG-TTNLQRCTYLVLDEADRM 504
L G TNL+R TYLV+DEADRM
Sbjct: 533 ILCTSSGKITNLRRVTYLVMDEADRM 558
Score = 57.6 bits (133), Expect = 8e-09
Identities = 24/45 (53%), Positives = 36/45 (80%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
MGFEPQI +I++ IRPDRQT+++SAT+P++V+ LA L ++I
Sbjct: 561 MGFEPQITRIVQNIRPDRQTVLFSATFPRQVETLARKVLNKPVEI 605
Score = 52.4 bits (120), Expect = 3e-07
Identities = 22/54 (40%), Positives = 34/54 (62%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
G +V PIQ++ + + +K + Y++P PIQAQ PI MSG++ +GVAK
Sbjct: 388 GKDVPRPIQFWHQTGLTSKILDTLKKLNYEKPMPIQAQALPIIMSGRDCIGVAK 441
Score = 50.4 bits (115), Expect = 1e-06
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHINNQPPIRRGDGPI 253
++TGSGKTL ++LP + HI +QPP+ GDGPI
Sbjct: 440 AKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPI 471
>At3g13920.1 68416.m01758 eukaryotic translation initiation factor
4A-1 / eIF-4A-1 eIF-4A-1 gi:15293046, gi:15450485;
contains Pfam profile PF00270: DEAD/DEAH box helicase;
contains Pfam profile PF00271: Helicase conserved
C-terminal domain
Length = 412
Score = 74.1 bits (174), Expect = 8e-14
Identities = 39/84 (46%), Positives = 49/84 (58%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+ D
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
L++ + VLDEAD ML
Sbjct: 171 MLKRQSLRADNIKMFVLDEADEML 194
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 513 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
GF+ QI I + + P Q ++SAT P E ++ ++ ++I
Sbjct: 197 GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRI 240
>At1g72730.1 68414.m08410 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative similar to Eukaryotic
initiation factor 4A-10 GB:P41382 [Nicotiana tabacum];
identical to (putative) RNA helicase GB:CAA09211
[Arabidopsis thaliana] (Nucleic Acids Res. 27 (2),
628-636 (1999))
Length = 414
Score = 74.1 bits (174), Expect = 8e-14
Identities = 39/84 (46%), Positives = 48/84 (57%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+ D
Sbjct: 113 LVLAPTRELAQQIEKVMRALGDYLGVKAQACVGGTSVREDQRVLQSGVHVVVGTPGRVFD 172
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
L + + VLDEAD ML
Sbjct: 173 LLRRQSLRADAIKMFVLDEADEML 196
>At1g54270.1 68414.m06187 eukaryotic translation initiation factor
4A-2 / eIF-4A-2 similar to eukaryotic translation
initiation factor 4A GI:19696 from [Nicotiana
plumbaginifolia]
Length = 412
Score = 72.5 bits (170), Expect = 3e-13
Identities = 39/84 (46%), Positives = 48/84 (57%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LVLAPTRELAQQI++V G V+ GG RE R L+ GV +V+ TPGR+ D
Sbjct: 111 LVLAPTRELAQQIEKVMRALGDYQGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFD 170
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
L + + VLDEAD ML
Sbjct: 171 MLRRQSLRPDCIKMFVLDEADEML 194
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +3
Query: 513 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
GF+ QI I + + P Q ++SAT P E ++ ++ ++I
Sbjct: 197 GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRI 240
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 71.7 bits (168), Expect = 5e-13
Identities = 34/83 (40%), Positives = 50/83 (60%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
+VL PTREL++Q+ +VA H + R+ V GG+ R Q L +++V+ TPGR++
Sbjct: 193 VVLCPTRELSEQVYRVAKSISHHARFRSILVSGGSRIRPQEDSLNNAIDMVVGTPGRILQ 252
Query: 436 FLEKGTTNLQRCTYLVLDEADRM 504
+E+G YLVLDEAD M
Sbjct: 253 HIEEGNMVYGDIAYLVLDEADTM 275
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/16 (75%), Positives = 14/16 (87%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAI 205
S TGSGKTLAY+LP +
Sbjct: 156 SHTGSGKTLAYLLPIV 171
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 71.3 bits (167), Expect = 6e-13
Identities = 39/90 (43%), Positives = 53/90 (58%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 LVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEIVIAT 417
L++ P+RELA+Q ++Q A Y +R+ GG R Q ++RGV IV+AT
Sbjct: 226 LIVCPSRELARQTYEVVEQFVAPLVEAGYPPLRSLLCIGGIDMRSQLEVVKRGVHIVVAT 285
Query: 418 PGRLIDFLEKGTTNLQRCTYLVLDEADRML 507
PGRL D L K +L C YL LDEADR++
Sbjct: 286 PGRLKDMLAKKKMSLDACRYLTLDEADRLV 315
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/53 (37%), Positives = 35/53 (66%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 161
G ++ PI+ F++ FP V +K G +PTPIQ QG P+ ++G++++G+A
Sbjct: 138 GDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPTPIQVQGLPVILAGRDMIGIA 190
Score = 38.3 bits (85), Expect = 0.005
Identities = 16/41 (39%), Positives = 26/41 (63%)
Frame = +3
Query: 504 VGMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 626
V +GFE IR++ + + RQTL++SAT P +++ A L
Sbjct: 315 VDLGFEDDIREVFDHFKSQRQTLLFSATMPTKIQIFARSAL 355
Score = 31.9 bits (69), Expect = 0.45
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHINNQP---PIRRGDGPI 253
TGSGKTL ++LP I+ + PI G+GPI
Sbjct: 192 TGSGKTLVFVLPMIMIALQEEMMMPIAAGEGPI 224
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/84 (42%), Positives = 47/84 (55%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
+VLAPTREL Q++ A G + V GG P Q +++GVE++I TPGR++D
Sbjct: 190 MVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVD 249
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
L K T L VLDE D ML
Sbjct: 250 LLSKHTIELDNIMTFVLDEVDCML 273
Score = 40.7 bits (91), Expect = 0.001
Identities = 20/53 (37%), Positives = 28/53 (52%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 161
G V P+ F P + ++T GY PTPIQ Q P A++GK+L+ A
Sbjct: 102 GSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIPAALTGKSLLASA 154
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 70.1 bits (164), Expect = 1e-12
Identities = 36/84 (42%), Positives = 47/84 (55%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
+VLAPTREL Q++ A G + V GG P Q +++GVE++I TPGR++D
Sbjct: 53 MVLAPTRELCVQVEDQAKMLGKGLPFKTALVVGGDPMSGQLYRIQQGVELIIGTPGRVVD 112
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
L K T L VLDE D ML
Sbjct: 113 LLSKHTIELDNIMTFVLDEVDCML 136
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 68.9 bits (161), Expect = 3e-12
Identities = 35/84 (41%), Positives = 51/84 (60%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LVL PTRELA+Q+ +G + + + C++GG Q L+RGV+IV+ TPGR+ D
Sbjct: 178 LVLLPTRELAKQVAADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGVDIVVGTPGRIKD 237
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
+E+ + + VLDEAD ML
Sbjct: 238 HIERQNLDFSYLQFRVLDEADEML 261
Score = 31.1 bits (67), Expect = 0.78
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +2
Query: 155 RSQTGSGKTLAYILPAIVHINNQP 226
R++TG GKTLA++LP + + N P
Sbjct: 139 RARTGQGKTLAFVLPILESLVNGP 162
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 68.1 bits (159), Expect = 6e-12
Identities = 36/85 (42%), Positives = 51/85 (60%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 432
LVL+P+RELA Q ++ G HT+ + C+ GG E + LERGV V TPGR+
Sbjct: 94 LVLSPSRELASQTEKTIQAIGAHTNIQAHACI-GGKSIGEDIKKLERGVHAVSGTPGRVY 152
Query: 433 DFLEKGTTNLQRCTYLVLDEADRML 507
D +++G+ + LVLDE+D ML
Sbjct: 153 DMIKRGSLQTKAVKLLVLDESDEML 177
Score = 44.0 bits (99), Expect = 1e-04
Identities = 44/208 (21%), Positives = 84/208 (40%)
Frame = +3
Query: 21 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAKRWPTSCQ 200
PI+ F++ D V +GV GYK+P+ IQ + + G++++ A+ K +
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQQRALVPILKGRDVIAQAQSGTGKTSMIAIS 79
Query: 201 PLCT*ITNRLFGEVMVRLFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVWWCS*KRASP 380
+C I N V++ L + +++ + H H C+ S
Sbjct: 80 -VCQ-IVN--ISSRKVQVLVLSPSRELASQTEKTIQAIGAHTNIQAHACIGGKSIGEDIK 135
Query: 381 GLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHIFSS**G*SYVGMGFEPQIRKIIEQIRPD 560
L G + + +G Q AV + + G + QI + + D
Sbjct: 136 KLERGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEMLSKGLKDQIYDVYRALPHD 195
Query: 561 RQTLMWSATWPKEVKKLAEDYLGDYIQI 644
Q + SAT P+E+ ++ E ++ D ++I
Sbjct: 196 IQVCLISATLPQEILEMTEKFMTDPVRI 223
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 67.3 bits (157), Expect = 1e-11
Identities = 38/90 (42%), Positives = 52/90 (57%), Gaps = 6/90 (6%)
Frame = +1
Query: 256 LVLAPTRELAQQ----IQQVAADFGHTSY--VRNTCVFGGAPKREQARDLERGVEIVIAT 417
LV+ P+RELA+Q ++Q A Y +R+ GG R Q +++GV IV+AT
Sbjct: 177 LVICPSRELAKQTYDVVEQFVASLVEDGYPRLRSLLCIGGVDMRSQLDVVKKGVHIVVAT 236
Query: 418 PGRLIDFLEKGTTNLQRCTYLVLDEADRML 507
PGRL D L K +L C L LDEADR++
Sbjct: 237 PGRLKDILAKKKMSLDACRLLTLDEADRLV 266
Score = 50.4 bits (115), Expect = 1e-06
Identities = 20/53 (37%), Positives = 34/53 (64%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 161
G ++ PI+ F + FP + + +K G PTPIQ QG P+ +SG++++G+A
Sbjct: 89 GEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHPTPIQVQGLPVVLSGRDMIGIA 141
Score = 37.1 bits (82), Expect = 0.012
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +3
Query: 504 VGMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 626
V +GFE IR + + + RQTL++SAT P +++ A L
Sbjct: 266 VDLGFEDDIRHVFDHFKSQRQTLLFSATMPAKIQIFATSAL 306
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHINNQP---PIRRGDGPI 253
TGSGKTL ++LP I+ + PI G+GPI
Sbjct: 143 TGSGKTLVFVLPMIILALQEEIMMPIAAGEGPI 175
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/97 (32%), Positives = 54/97 (55%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++D
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 436 FLEKGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSLS 546
+KG L+ C+ LV+DEAD++L + E +S
Sbjct: 263 LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLIS 299
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 179
FE+ + G+ G++ P+PIQ + PIA++G++++ AK K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 516 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 626
F+P + +I + RQ LM+SAT+P VK + +L
Sbjct: 290 FQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFL 326
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 67.3 bits (157), Expect = 1e-11
Identities = 32/97 (32%), Positives = 54/97 (55%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
+++ PTRELA Q QV + G ++ GG ++ L + V +++ TPGR++D
Sbjct: 203 VIIVPTRELALQTSQVCKELGKHLKIQVMVTTGGTSLKDDIMRLYQPVHLLVGTPGRILD 262
Query: 436 FLEKGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSLS 546
+KG L+ C+ LV+DEAD++L + E +S
Sbjct: 263 LTKKGVCVLKDCSVLVMDEADKLLSQEFQPSVEHLIS 299
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/49 (30%), Positives = 28/49 (57%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 179
FE+ + G+ G++ P+PIQ + PIA++G++++ AK K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
Score = 32.3 bits (70), Expect = 0.34
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +3
Query: 516 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 626
F+P + +I + RQ LM+SAT+P VK + +L
Sbjct: 290 FQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFL 326
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++D
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
+KG L+ C LV+DEAD++L
Sbjct: 256 LTKKGVCVLKDCAMLVMDEADKLL 279
Score = 34.3 bits (75), Expect = 0.084
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 179
FE+ + +G+ G+++P+PIQ + PIA++G +++ AK K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +3
Query: 516 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 626
F+P + ++I+ + +RQ LM+SAT+P VK + +L
Sbjct: 283 FQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHL 319
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/84 (36%), Positives = 48/84 (57%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
++L PTRELA Q QV + ++ GG R+ L + V +++ TPGR++D
Sbjct: 196 MILVPTRELALQTSQVCKELSKYLNIQVMVTTGGTSLRDDIMRLHQPVHLLVGTPGRILD 255
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
+KG L+ C LV+DEAD++L
Sbjct: 256 LTKKGVCVLKDCAMLVMDEADKLL 279
Score = 34.3 bits (75), Expect = 0.084
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 179
FE+ + +G+ G+++P+PIQ + PIA++G +++ AK K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +3
Query: 516 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 626
F+P + ++I+ + +RQ LM+SAT+P VK + +L
Sbjct: 283 FQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHL 319
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 65.3 bits (152), Expect = 4e-11
Identities = 31/84 (36%), Positives = 47/84 (55%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
++L PTRELA Q QV + + GG R+ L + V +++ TPGR++D
Sbjct: 226 VILVPTRELALQTSQVCKELSKYLKIEVMVTTGGTSLRDDIMRLYQPVHLLVGTPGRILD 285
Query: 436 FLEKGTTNLQRCTYLVLDEADRML 507
+KG L+ C LV+DEAD++L
Sbjct: 286 LAKKGVCVLKDCAMLVMDEADKLL 309
Score = 36.3 bits (80), Expect = 0.021
Identities = 16/37 (43%), Positives = 24/37 (64%)
Frame = +3
Query: 516 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYL 626
F+P I ++I+ + RQ LM+SAT+P VK + YL
Sbjct: 313 FQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYL 349
Score = 34.3 bits (75), Expect = 0.084
Identities = 15/49 (30%), Positives = 29/49 (59%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAK 179
FE+ + +G+ G+++P+PIQ + PIA++G +++ AK K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At3g19760.1 68416.m02501 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative / DEAD box RNA helicase,
putative contains DEAD/DEAH helicase domain; similar to
RNA helicase GB:CAA09195 from [Arabidopsis thaliana];
identical to cDNA DEAD box RNA helicase, RH2 GI:3775984
Length = 408
Score = 64.1 bits (149), Expect = 9e-11
Identities = 33/85 (38%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFG-HTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 432
L+L+PTRELA Q ++ G H + + C+ GG E R LE GV +V TPGR+
Sbjct: 107 LILSPTRELATQTEKTIQAIGLHANIQAHACI-GGNSVGEDIRKLEHGVHVVSGTPGRVC 165
Query: 433 DFLEKGTTNLQRCTYLVLDEADRML 507
D +++ + + L+LDE+D ML
Sbjct: 166 DMIKRRSLRTRAIKLLILDESDEML 190
Score = 32.7 bits (71), Expect = 0.26
Identities = 38/208 (18%), Positives = 81/208 (38%)
Frame = +3
Query: 21 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAKRWPTSCQ 200
PI F + + V +GV G+++P+ IQ + + G++++ A+ K +
Sbjct: 33 PITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALS 92
Query: 201 PLCT*ITNRLFGEVMVRLFGLGAYQRVSTTNSASCCRFWTHILCS*HVCVWWCS*KRASP 380
+C + + EV + L + ++T + H H C+ S
Sbjct: 93 -VCQ-VVDTSSREVQALI--LSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIR 148
Query: 381 GLGEGSRNSHCYSR*IN*FLGKGHNQLTAVHIFSS**G*SYVGMGFEPQIRKIIEQIRPD 560
L G + + + + A+ + + GF+ QI + + PD
Sbjct: 149 KLEHGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEMLSRGFKDQIYDVYRYLPPD 208
Query: 561 RQTLMWSATWPKEVKKLAEDYLGDYIQI 644
Q + SAT P E+ ++ ++ + ++I
Sbjct: 209 LQVCLVSATLPHEILEMTSKFMTEPVKI 236
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 63.7 bits (148), Expect = 1e-10
Identities = 35/85 (41%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L+L PTRELA QI + + + ++ + GG REQ L +IV+ATPGR+ID
Sbjct: 242 LILTPTRELAVQIHSMIQNLAQFTDIKCGLIVGGLSVREQEVVLRSMPDIVVATPGRMID 301
Query: 436 FLEKG-TTNLQRCTYLVLDEADRML 507
L + +L L+LDEADR+L
Sbjct: 302 HLRNSMSVDLDDLAVLILDEADRLL 326
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/53 (39%), Positives = 31/53 (58%)
Frame = +3
Query: 3 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVA 161
GV H F E N + + +T+GYK+PTPIQA P+A++G++L A
Sbjct: 161 GVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGRDLCASA 211
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +3
Query: 513 GFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 617
GF +I +++ RQT+++SAT +EVK+L +
Sbjct: 329 GFATEITELVRLCPKRRQTMLFSATMTEEVKELVK 363
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 63.3 bits (147), Expect = 2e-10
Identities = 41/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Frame = +1
Query: 229 YSER*WSDCLVLAPTRELAQQIQQVAADFGHTSYVRNTC--VFGGAPKREQARDLERGVE 402
++ R + LV+ PTRELA Q VA + Y T V GG ++ +A L +GV
Sbjct: 221 FTPRNGTGVLVICPTRELAIQSYGVAKEL--LKYHSQTVGKVIGGEKRKTEAEILAKGVN 278
Query: 403 IVIATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLVWDLNHKSEKSLSKYAQT 561
+++ATPGRL+D LE + + +LV+DEADR+L + +K L+ +T
Sbjct: 279 LLVATPGRLLDHLENTNGFIFKNLKFLVMDEADRILEQNFEEDLKKILNLLPKT 332
Score = 34.7 bits (76), Expect = 0.064
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
FE + D + +K MG+ T IQA+ P M G++++G A+
Sbjct: 156 FESLSLSDNTYKSIKEMGFARMTQIQAKAIPPLMMGEDVLGAAR 199
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/44 (29%), Positives = 25/44 (56%)
Frame = +2
Query: 74 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 205
K+ G R + + + ++ ++TGSGKTLA+++PA+
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 516 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLA 614
FE ++KI+ + RQT ++SAT +V+ LA
Sbjct: 318 FEEDLKKILNLLPKTRQTSLFSATQSAKVEDLA 350
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 62.5 bits (145), Expect = 3e-10
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 1/133 (0%)
Frame = +1
Query: 229 YSER*WSDCLVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIV 408
+S R + +V+ PTRELA Q + VA + + V GG +R +A+ + G +V
Sbjct: 156 FSPRNGTGVIVICPTRELAIQTKNVAEELLKHHSQTVSMVIGGNNRRSEAQRIASGSNLV 215
Query: 409 IATPGRLIDFLEKGTTNL-QRCTYLVLDEADRMLVWDLNHKSEKSLSKYAQTDRL*CGQL 585
IATPGRL+D L+ + + LV+DEADR+L + K L +T +
Sbjct: 216 IATPGRLLDHLQNTKAFIYKHLKCLVIDEADRILEENFEEDMNKILKILPKTRQTALFSA 275
Query: 586 LGPKK*RNLLRIT 624
K ++L R++
Sbjct: 276 TQTSKVKDLARVS 288
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 74 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI-VHINNQPPIRRGDGP 250
K+ G Q + + K+ ++TGSGKTLA+++PA+ + + R G G
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAVELLFKERFSPRNGTGV 164
Query: 251 IV 256
IV
Sbjct: 165 IV 166
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
F+ + + +K MG++ T IQA + GK+++G A+
Sbjct: 91 FDSLDLSEQTSIAIKEMGFQYMTQIQAGSIQPLLEGKDVLGAAR 134
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 62.1 bits (144), Expect = 4e-10
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L+L+PTR+LA+Q + + G + +R + + GG +Q +L +G +++IATPGRL+
Sbjct: 102 LILSPTRDLAEQTLKFTKELGKFTDLRVSLLVGGDSMEDQFEELTKGPDVIIATPGRLMH 161
Query: 436 FL-EKGTTNLQRCTYLVLDEADRM 504
L E L+ Y+V DEAD +
Sbjct: 162 LLSEVDDMTLRTVEYVVFDEADSL 185
Score = 40.3 bits (90), Expect = 0.001
Identities = 18/44 (40%), Positives = 26/44 (59%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
FE N V +K GYK PTPIQ + P+ +SG ++V +A+
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLILSGVDVVAMAR 73
Score = 39.1 bits (87), Expect = 0.003
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = +3
Query: 498 SYVGMGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 617
S GMGF Q+ +I+ Q+ +RQTL++SAT P + + A+
Sbjct: 184 SLFGMGFAEQLHQILTQLSENRQTLLFSATLPSALAEFAK 223
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 61.3 bits (142), Expect = 6e-10
Identities = 41/99 (41%), Positives = 57/99 (57%), Gaps = 2/99 (2%)
Frame = +1
Query: 259 VLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDF 438
VL+PTRELA QI + G +R + GG + +Q L + +++ATPGRL D
Sbjct: 94 VLSPTRELAIQIAEQFEALGADISLRCAVLVGGIDRMQQTIALGKRPHVIVATPGRLWDH 153
Query: 439 LE--KGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSLSK 549
+ KG +L+ YLVLDEADR+ LN EKSL++
Sbjct: 154 MSDTKG-FSLKSLKYLVLDEADRL----LNEDFEKSLNQ 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/52 (28%), Positives = 32/52 (61%)
Frame = +3
Query: 9 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
E + ++ F E + + + + +G+K P+ IQA+ P A+ GK+++G+A+
Sbjct: 3 EENEVVKTFAELGVREELVKACERLGWKNPSKIQAEALPFALEGKDVIGLAQ 54
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 60.1 bits (139), Expect = 1e-09
Identities = 34/87 (39%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
L++ PTRELA Q+ + + V+ + GG +Q R L+ EIV+ATPGRL +
Sbjct: 283 LIITPTRELALQVTEHLENAAKNLSVKVVPIVGGMFSEKQERRLKEKPEIVVATPGRLWE 342
Query: 436 FL---EKGTTNLQRCTYLVLDEADRML 507
+ EK L ++ VLDEADRM+
Sbjct: 343 LMSAGEKHLVELHSLSFFVLDEADRMV 369
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 128 SYVWKEFSWRSQTGSGKTLAYILPAI 205
+Y K+ ++TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At5g05450.1 68418.m00587 DEAD/DEAH box helicase, putative (RH18)
Length = 593
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/87 (36%), Positives = 51/87 (58%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLER-GVEIVIATPGRL 429
++++PTREL+ QI VA F T + V + + GG + + +E G ++I TPGRL
Sbjct: 94 VIISPTRELSTQIYNVAQPFVSTLANVNSVLLVGGREVKADMKIIEEEGCNVLIGTPGRL 153
Query: 430 IDFLEK-GTTNLQRCTYLVLDEADRML 507
D +E+ + + L+LDEADR+L
Sbjct: 154 SDIMERMEILDFRNLEILILDEADRLL 180
Score = 32.3 bits (70), Expect = 0.34
Identities = 16/48 (33%), Positives = 31/48 (64%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQIPYR 653
MGF+ Q+ II ++ R+T ++SAT + V++LA+ L + +++ R
Sbjct: 182 MGFQRQVNYIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVR 229
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/23 (43%), Positives = 18/23 (78%)
Frame = +2
Query: 137 WKEFSWRSQTGSGKTLAYILPAI 205
+K+ + + TGSGKTLA+++P +
Sbjct: 53 YKDVAVDAATGSGKTLAFVVPLV 75
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/82 (36%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSY-VRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 432
+VL PT ELA Q+ + R+ V GG +R Q +LE+GV+++IATPGR
Sbjct: 455 IVLVPTAELASQVLANCRSISKSGVPFRSMVVTGGFRQRTQLENLEQGVDVLIATPGRFT 514
Query: 433 DFLEKGTTNLQRCTYLVLDEAD 498
+ +G L +LDE D
Sbjct: 515 YLMNEGILGLSNLRCAILDEVD 536
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +2
Query: 161 QTGSGKTLAYILPAIVHINNQ 223
Q+GSGKTLAY++P I + +
Sbjct: 419 QSGSGKTLAYLVPVIQRLREE 439
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 55.6 bits (128), Expect = 3e-08
Identities = 30/86 (34%), Positives = 49/86 (56%), Gaps = 2/86 (2%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 432
LV+ PTREL Q+ + H ++ V GG K ++ L +G+ I+IATPGRL+
Sbjct: 108 LVIVPTRELCLQVYETLEKLLHRFHWIVPGYVMGGEKKAKEKARLRKGISILIATPGRLL 167
Query: 433 DFLEKGTTNLQR-CTYLVLDEADRML 507
D L+ + + + +++ DEAD +L
Sbjct: 168 DHLKNTASFVHKNLRWVIFDEADSIL 193
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHI-NNQPPIRRGDG 247
TG+GKT+AY+ P I H+ + P + R G
Sbjct: 76 TGTGKTIAYLAPLIHHLQGHSPKVDRSHG 104
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/24 (41%), Positives = 19/24 (79%)
Frame = +3
Query: 81 MGYKEPTPIQAQGWPIAMSGKNLV 152
MG++ PT +QAQ P+ +SG++++
Sbjct: 48 MGFEAPTLVQAQAIPVILSGRDVL 71
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 54.0 bits (124), Expect = 1e-07
Identities = 32/87 (36%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHT-SYVRNTCVFGGAPKREQARDL-ERGVEIVIATPGRL 429
++++PTREL+ QI +VA F T V + + GG L E G ++I TPGRL
Sbjct: 94 VIISPTRELSAQIHKVAEPFVSTLPNVNSVLLVGGREVEADMNTLEEEGANLLIGTPGRL 153
Query: 430 IDFLEK-GTTNLQRCTYLVLDEADRML 507
D +++ + + L+LDEADR+L
Sbjct: 154 SDMMKRMEFLDFRNLEILILDEADRLL 180
Score = 30.3 bits (65), Expect = 1.4
Identities = 15/45 (33%), Positives = 28/45 (62%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
MGF+ Q+ II ++ R+T ++SAT + V LA+ L + +++
Sbjct: 182 MGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAKAGLRNAMEV 226
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHI---NNQPP 229
TGSGKTLA++LP I I N+ PP
Sbjct: 62 TGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 51.6 bits (118), Expect = 5e-07
Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
LV+ PTRELA Q+ + G +R + + GG Q L IVI TPGR+
Sbjct: 130 LVVTPTRELAFQLAEQFKALGSCLNLRCSVIVGGMDMLTQTMSLVSRPHIVITTPGRIKV 189
Query: 436 FLEKG---TTNLQRCTYLVLDEADRML 507
LE R +LVLDEADR+L
Sbjct: 190 LLENNPDVPPVFSRTKFLVLDEADRVL 216
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/44 (27%), Positives = 27/44 (61%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
FE ++ + K +G ++PTP+Q P ++G++++G+A+
Sbjct: 60 FEGLGLAEWAVETCKELGMRKPTPVQTHCVPKILAGRDVLGLAQ 103
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/36 (36%), Positives = 23/36 (63%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 617
+GF+ ++R I + + RQTL++SAT ++ L E
Sbjct: 218 VGFQDELRTIFQCLPKSRQTLLFSATMTSNLQALLE 253
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/52 (26%), Positives = 26/52 (50%)
Frame = +2
Query: 71 CKDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQP 226
CK+ G+++ + + ++ +QTGSGKT A+ LP + + P
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDP 124
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 50.0 bits (114), Expect = 2e-06
Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 2/98 (2%)
Frame = +1
Query: 256 LVLAPTRELAQQI-QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVE-IVIATPGRL 429
+++AP+REL QI ++V G + GGA + Q L++ IV+ TPGR+
Sbjct: 195 MIVAPSRELGMQIVREVEKLLGPVHRRMVQQLVGGANRMRQEEALKKNKPAIVVGTPGRI 254
Query: 430 IDFLEKGTTNLQRCTYLVLDEADRMLVWDLNHKSEKSL 543
+ + G + C +LVLDE D +L ++ + L
Sbjct: 255 AEISKGGKLHTHGCRFLVLDEVDELLSFNFREDIHRIL 292
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +2
Query: 155 RSQTGSGKTLAYILPAIVHI 214
+S TGSGKTLAY+LP + I
Sbjct: 153 QSYTGSGKTLAYLLPILSEI 172
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLV 152
FEE PD + ++ G+ PT +Q+ P + G + V
Sbjct: 112 FEELGLPDSLLDSLEREGFSVPTDVQSAAVPAIIKGHDAV 151
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 48.8 bits (111), Expect = 4e-06
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 5/98 (5%)
Frame = +1
Query: 256 LVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 429
L+L PTRELA QI + A H T + G + +Q R +I+IATPGRL
Sbjct: 456 LILCPTRELASQIAAEGKALLKNHDGIGVQTLIGGTRFRLDQQRLESEPCQILIATPGRL 515
Query: 430 IDFLEKG---TTNLQRCTYLVLDEADRMLVWDLNHKSE 534
+D +E T+ L ++DEAD +L DL K +
Sbjct: 516 LDHIENKSGLTSRLMALKLFIVDEADLLL--DLGFKRD 551
Score = 37.5 bits (83), Expect = 0.009
Identities = 15/36 (41%), Positives = 28/36 (77%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 617
+GF+ + KII+ + RQ+L++SAT PKEV+++++
Sbjct: 546 LGFKRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQ 581
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +2
Query: 80 NGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 205
+G+ + + L++ K+ +++TG+GK++A++LPAI
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 48.4 bits (110), Expect = 5e-06
Identities = 36/99 (36%), Positives = 48/99 (48%), Gaps = 5/99 (5%)
Frame = +1
Query: 256 LVLAPTRELAQQI--QQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 429
L+L PTRELA QI + A H T + G K +Q R +I+IATPGRL
Sbjct: 409 LILCPTRELASQIAAEGKALLKFHDGIGVQTLIGGTRFKLDQQRLESEPCQILIATPGRL 468
Query: 430 IDFLEKG---TTNLQRCTYLVLDEADRMLVWDLNHKSEK 537
+D +E T+ L ++DEAD +L EK
Sbjct: 469 LDHIENKSGLTSRLMALKLFIVDEADLLLDLGFRRDVEK 507
Score = 37.1 bits (82), Expect = 0.012
Identities = 15/36 (41%), Positives = 27/36 (75%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 617
+GF + KII+ + RQ+L++SAT PKEV+++++
Sbjct: 499 LGFRRDVEKIIDCLPRQRQSLLFSATIPKEVRRVSQ 534
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/42 (28%), Positives = 27/42 (64%)
Frame = +2
Query: 80 NGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAI 205
+G+ + + L++ K+ +++TG+GK++A++LPAI
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 47.6 bits (108), Expect = 8e-06
Identities = 37/102 (36%), Positives = 47/102 (46%), Gaps = 5/102 (4%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 429
LV+ PTRELA Q A H S + G EQ R +I++ATPGRL
Sbjct: 134 LVICPTRELANQAATEANTLLKYHPSIGVQVVIGGTRLGLEQKRMQTNPCQILVATPGRL 193
Query: 430 IDFLEKG---TTNLQRCTYLVLDEADRMLVWDLNHKSEKSLS 546
D +E T L+ LVLDEAD +L E+ +S
Sbjct: 194 KDHIENTPGFATRLKGVKVLVLDEADHLLDMGFRKDIERIIS 235
Score = 36.7 bits (81), Expect = 0.016
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 611
MGF I +II + +RQT ++SAT P+EV+++
Sbjct: 224 MGFRKDIERIISAVPKERQTFLFSATVPEEVRQI 257
Score = 32.7 bits (71), Expect = 0.26
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +2
Query: 74 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPP 229
KD G + + L K+ +++TG+GKT+A++LP+I + PP
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 47.2 bits (107), Expect = 1e-05
Identities = 35/89 (39%), Positives = 43/89 (48%), Gaps = 5/89 (5%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 429
LV+ PTRELA Q A H S + G EQ R +I++ATPGRL
Sbjct: 462 LVVCPTRELASQAAAEANTLLKYHPSIGVQVVIGGTKLPTEQRRMQTNPCQILVATPGRL 521
Query: 430 IDFLEKGT---TNLQRCTYLVLDEADRML 507
D +E + T L LVLDEAD +L
Sbjct: 522 KDHIENTSGFATRLMGVKVLVLDEADHLL 550
Score = 35.9 bits (79), Expect = 0.028
Identities = 18/55 (32%), Positives = 29/55 (52%)
Frame = +2
Query: 74 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQPPIRR 238
KD G + + L K+ +++TG+GKT+A++LPAI + PP R
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASR 452
Score = 35.1 bits (77), Expect = 0.048
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 611
MGF I +II + RQT ++SAT P+EV+++
Sbjct: 552 MGFRRDIERIIAAVPKQRQTFLFSATVPEEVRQI 585
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 46.4 bits (105), Expect = 2e-05
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 CLVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLI 432
C++++PTRELA Q V G + GG + ++ + I++ PGRL+
Sbjct: 146 CIIISPTRELAAQTFGVLNKVGKFHKFSAGLLIGGREGVDVEKERVHEMNILVCAPGRLL 205
Query: 433 DFLEKGTTNLQ--RCTYLVLDEADRML 507
+++ T N + + L+LDEADR+L
Sbjct: 206 QHMDE-TPNFECPQLQILILDEADRVL 231
Score = 35.1 bits (77), Expect = 0.048
Identities = 21/45 (46%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = +3
Query: 516 FEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD--YIQI 644
F+ Q+ II Q+ RQTL++SAT K+VK LA L D YI +
Sbjct: 235 FKGQLDPIISQLPKHRQTLLFSATQTKKVKDLARLSLRDPEYISV 279
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/43 (27%), Positives = 27/43 (62%)
Frame = +2
Query: 95 TDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINNQ 223
TD S++ + + ++ ++TGSGKTLA+++P + ++ +
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 45.2 bits (102), Expect = 4e-05
Identities = 33/102 (32%), Positives = 51/102 (50%), Gaps = 5/102 (4%)
Frame = +1
Query: 256 LVLAPTRELA-QQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERG-VEIVIATPGRL 429
LV+ PTRELA Q + + + V GG + R L++ +I++ATPGRL
Sbjct: 160 LVVCPTRELACQAAAEANILLKYHPSIGVQVVIGGTKLPTEQRRLQKSPCQILVATPGRL 219
Query: 430 IDFLEKGT---TNLQRCTYLVLDEADRMLVWDLNHKSEKSLS 546
D ++ + T L LVLDEAD +L + E+ ++
Sbjct: 220 KDHIDNTSGFATRLMGVKVLVLDEADHLLDMGFRREIERIIA 261
Score = 33.1 bits (72), Expect = 0.19
Identities = 13/33 (39%), Positives = 23/33 (69%)
Frame = +2
Query: 140 KEFSWRSQTGSGKTLAYILPAIVHINNQPPIRR 238
K+ +++TG+GKT+A++LP+I + PP R
Sbjct: 118 KDILAKAKTGTGKTVAFLLPSIEAVIKAPPASR 150
Score = 31.9 bits (69), Expect = 0.45
Identities = 14/34 (41%), Positives = 22/34 (64%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKL 611
MGF +I +II + RQT ++SAT EV+++
Sbjct: 250 MGFRREIERIIAAVPKQRQTFLFSATVSDEVRQI 283
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/44 (25%), Positives = 23/44 (52%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
F++ +G++ G+K T +Q P+ + GK+++ AK
Sbjct: 82 FDQFPLSPLTLKGIEDAGFKTMTVVQEATLPLILQGKDILAKAK 125
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 45.2 bits (102), Expect = 4e-05
Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 2/46 (4%)
Frame = +1
Query: 376 ARDLERGVEIVIATPGRLIDFLE--KGTTNLQRCTYLVLDEADRML 507
+++LE V+I++ATPGRL+D + KG T L+ YLV+DE DR+L
Sbjct: 159 SQNLESAVDILVATPGRLMDHINNTKGFT-LEHLRYLVVDETDRLL 203
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHINNQPPIR 235
S TGSGKTL+Y LP IV + P+R
Sbjct: 69 SPTGSGKTLSYALP-IVQLLASRPVR 93
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATPG 423
LVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TPG
Sbjct: 118 LVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPG 175
Query: 424 RLIDFLEKGTTNLQRCTYLVLDEADRML 507
R++ + +L+ + +LDE D+ML
Sbjct: 176 RVLALAREKDLSLKNVRHFILDECDKML 203
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/39 (28%), Positives = 26/39 (66%)
Frame = +3
Query: 528 IRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
+++I + D+Q +M+SAT KE++ + + ++ D ++I
Sbjct: 212 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 250
>At5g11170.2 68418.m01306 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 344
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATPG 423
LVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TPG
Sbjct: 35 LVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPG 92
Query: 424 RLIDFLEKGTTNLQRCTYLVLDEADRML 507
R++ + +L+ + +LDE D+ML
Sbjct: 93 RVLALAREKDLSLKNVRHFILDECDKML 120
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/39 (28%), Positives = 26/39 (66%)
Frame = +3
Query: 528 IRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
+++I + D+Q +M+SAT KE++ + + ++ D ++I
Sbjct: 129 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 167
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 43.2 bits (97), Expect = 2e-04
Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 4/88 (4%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNT--CVFGGAPKREQARDLERGV--EIVIATPG 423
LVL TRELA QI F ++Y+ +T VF G + +DL + IV+ TPG
Sbjct: 118 LVLCHTRELAYQICNEFVRF--STYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPG 175
Query: 424 RLIDFLEKGTTNLQRCTYLVLDEADRML 507
R++ + +L+ + +LDE D+ML
Sbjct: 176 RVLALAREKDLSLKNVRHFILDECDKML 203
Score = 29.9 bits (64), Expect = 1.8
Identities = 11/39 (28%), Positives = 26/39 (66%)
Frame = +3
Query: 528 IRKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGDYIQI 644
+++I + D+Q +M+SAT KE++ + + ++ D ++I
Sbjct: 212 VQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEI 250
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 41.1 bits (92), Expect = 7e-04
Identities = 28/85 (32%), Positives = 45/85 (52%), Gaps = 1/85 (1%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLID 435
++++PTREL+ QI +VA + + V E E G ++I TPGRL D
Sbjct: 95 VIISPTRELSAQIHKVARAV-RLDFAKCREVEADMNTLE-----EEGANLLIGTPGRLSD 148
Query: 436 FLEK-GTTNLQRCTYLVLDEADRML 507
+++ + + L+LDEADR+L
Sbjct: 149 MMKRMEFLDFRNLEILILDEADRLL 173
Score = 29.5 bits (63), Expect = 2.4
Identities = 14/36 (38%), Positives = 23/36 (63%)
Frame = +3
Query: 510 MGFEPQIRKIIEQIRPDRQTLMWSATWPKEVKKLAE 617
MGF+ Q+ II ++ R+T ++SAT + V LA+
Sbjct: 175 MGFQKQVNYIISRLPKQRRTGLFSATQTQAVADLAK 210
Score = 28.7 bits (61), Expect = 4.2
Identities = 15/25 (60%), Positives = 18/25 (72%), Gaps = 3/25 (12%)
Frame = +2
Query: 164 TGSGKTLAYILPAIVHI---NNQPP 229
TGSGKTLA++LP I I N+ PP
Sbjct: 63 TGSGKTLAFLLPFIEIIRRSNSYPP 87
>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
helicase, Mus musculus, PIR:I49731
Length = 496
Score = 39.9 bits (89), Expect = 0.002
Identities = 28/89 (31%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQA--RDLERGVEIVIATPGRL 429
L + PTRELA Q +V G + + + + A R +VI TPG L
Sbjct: 166 LCICPTRELANQNMEVLQKMGKFTGITAELAVPDSTRGAPAATRGAPVSAHVVIGTPGTL 225
Query: 430 IDFLEKGTTNLQRCTYLVLDEADRMLVWD 516
++ L LV DEAD ML D
Sbjct: 226 KKWMAFKRLGLNHLKILVFDEADHMLATD 254
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/50 (36%), Positives = 26/50 (52%)
Frame = +3
Query: 57 YVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAKRVPAKRWPTSCQPL 206
Y+ + + +G+KEPTPIQ Q PI +SG+ A K + C L
Sbjct: 151 YILRNLAELGFKEPTPIQRQAIPILLSGRECFACAPTGSGKTFAFICPML 200
Score = 32.7 bits (71), Expect = 0.26
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 2/85 (2%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADF--GHTSYVRNTCVFGGAPKREQARDLERGVEIVIATPGRL 429
++L+P RELA Q + G ++R P + A + +++I+TP RL
Sbjct: 214 VILSPARELAAQTAREGKKLIKGSNFHIRLMT----KPLVKTADFSKLWCDVLISTPMRL 269
Query: 430 IDFLEKGTTNLQRCTYLVLDEADRM 504
++ +L + YLVLDE+D++
Sbjct: 270 KRAIKAKKIDLSKVEYLVLDESDKL 294
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 33.1 bits (72), Expect = 0.19
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 6/87 (6%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSY--VRNTCVF----GGAPKREQARDLERGVEIVIAT 417
+++ PTREL Q+ +VA S V+ V GG +R ++ I++AT
Sbjct: 148 VIVVPTRELGMQVTKVARMLAAKSEIDVKGCTVMALLDGGTLRRHKSWLKAEPPAILVAT 207
Query: 418 PGRLIDFLEKGTTNLQRCTYLVLDEAD 498
L LEK + LV+DE D
Sbjct: 208 VASLCHMLEKHIFRIDSVRVLVVDEVD 234
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = +2
Query: 158 SQTGSGKTLAYILPAIVHINNQ 223
+QTGSGKTL Y+L IN Q
Sbjct: 120 AQTGSGKTLTYLLLIFSLINPQ 141
>At2g28600.1 68415.m03476 expressed protein
Length = 502
Score = 32.7 bits (71), Expect = 0.26
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Frame = +1
Query: 256 LVLAPTRELAQQIQQVAADFGHTSYVRNTCVFGGAPKREQARDLER-GVEIVIATPGRLI 432
L L P++ A Q++ V + + GAP Q L+ E ++ATP RL+
Sbjct: 200 LYLVPSQSKASQVRSVCKALKGIG-IHTVSLHQGAPLDHQISGLKSVEPEFIVATPERLL 258
Query: 433 DFLEKGTTNLQRCTYLVLDE 492
+ + ++ + LV+DE
Sbjct: 259 EIVTLKGVDISNVSLLVIDE 278
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 31.5 bits (68), Expect = 0.59
Identities = 13/22 (59%), Positives = 18/22 (81%)
Frame = +2
Query: 140 KEFSWRSQTGSGKTLAYILPAI 205
K+ R++TGSGKTLAY+LP +
Sbjct: 84 KDVVARAKTGSGKTLAYLLPLL 105
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +3
Query: 33 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMSGKNLVGVAK 164
FEE + + + G ++PT IQ P + GK++V AK
Sbjct: 48 FEELGLDSRLIRALTKKGIEKPTLIQQSAIPYILEGKDVVARAK 91
Score = 28.3 bits (60), Expect = 5.5
Identities = 25/89 (28%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Frame = +1
Query: 259 VLAPTRELAQQIQQVAADFGHTSYVRNTCV-FGGAPKREQARDLERGV-EIVIATPGRLI 432
+L P+REL QQ+ + V+ V + R+ G+ EI+++TP +
Sbjct: 125 ILVPSRELCQQVYTEVSSLIELCRVQLKAVQLTSSMSASDMRNALAGLPEILVSTPACIP 184
Query: 433 DFLEKG----TTNLQRCTYLVLDEADRML 507
G T + + LVLDEAD +L
Sbjct: 185 KCFAAGVLEPTAVSESLSILVLDEADLLL 213
>At1g09010.1 68414.m01005 glycoside hydrolase family 2 protein low
similarity to mannosidase [gi:5359712] from Cellulomonas
fimi
Length = 944
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/63 (26%), Positives = 28/63 (44%), Gaps = 4/63 (6%)
Frame = +3
Query: 9 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQA----QGWPIAMSGKNLVGVAKRVPA 176
E+ P +F++ + V ++G I+A +GW I + K L G K VP
Sbjct: 529 EIQYPEDFFKDTYYKYGFNPEVGSVGMPVAETIRATMPPEGWTIPLFKKGLDGFIKEVPN 588
Query: 177 KRW 185
+ W
Sbjct: 589 RMW 591
>At4g39080.1 68417.m05534 vacuolar proton ATPase, putative similar
to Swiss-Prot:Q93050 vacuolar proton translocating
ATPase 116 kDa subunit A isoform 1 (Clathrin-coated
vesicle/synaptic vesicle proton pump 116 kDa subunit,
Vacuolar proton pump subunit 1, Vacuolar adenosine
triphosphatase subunit Ac116) [Homo sapiens]
Length = 821
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +1
Query: 325 SYVRNTCVFGGAPKREQARDLERGVEIVIATPGRLIDFLEKGTTNLQRCTYLVLDEADRM 504
S + C GA + + DL R +++ GRL + L + L+ D+
Sbjct: 254 SKILKICEAFGANRYPFSEDLGRQAQMITEVSGRLSELKTTIDAGLGQRNILLQTIGDKF 313
Query: 505 LVWDLNHKSEKSL 543
+W+L + EK++
Sbjct: 314 ELWNLKVRKEKAI 326
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/49 (28%), Positives = 23/49 (46%)
Frame = +2
Query: 74 KDNGLQRTDAHSSSRLADSYVWKEFSWRSQTGSGKTLAYILPAIVHINN 220
+D+G R + + K+ ++TGSGKT Y+ P I + N
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At1g15820.1 68414.m01898 chlorophyll A-B binding protein,
chloroplast (LHCB6) nearly identical to Lhcb6 protein
[Arabidopsis thaliana] GI:4741960; contains Pfam profile
PF00504: Chlorophyll A-B binding protein
Length = 258
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = +3
Query: 531 RKIIEQIRPDRQTLMWSATWPKEVKKLAEDYLGD 632
++ ++ PD Q++ W+ W K + A +Y GD
Sbjct: 159 KRWVDFFNPDSQSVEWATPWSKTAENFA-NYTGD 191
>At1g11920.1 68414.m01376 pectate lyase family protein similar to
pectate lyase GI:14289169 from [Salix gilgiana]
Length = 384
Score = 27.5 bits (58), Expect = 9.6
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = +2
Query: 110 SSRLADSYVWKEFSWRSQTGSGKTLAYILPA 202
+ R+ Y WK + WR+ K AY +P+
Sbjct: 313 TKRIDSGYDWKRWKWRTSKDVFKNGAYFVPS 343
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,296,865
Number of Sequences: 28952
Number of extensions: 388801
Number of successful extensions: 1251
Number of sequences better than 10.0: 69
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1206
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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