Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30132
(453 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0231 + 21733151-21734905 28 3.1
09_02_0338 + 7426999-7428322,7428390-7428646 28 4.0
06_03_0832 + 25190755-25190960,25191869-25191997,25192079-251923... 27 5.3
06_03_0825 - 25109742-25110473,25110546-25110833,25110930-251109... 27 5.3
05_03_0618 - 16262826-16263097,16263111-16263183 27 5.3
09_04_0269 + 16265191-16265472,16265574-16266149 27 7.1
05_03_0564 - 15502458-15503303,15503394-15503474,15503572-155036... 27 7.1
05_03_0563 - 15493570-15494415,15494506-15494586,15494684-154947... 27 7.1
05_03_0562 - 15484733-15485578,15485669-15485749,15485847-154858... 27 7.1
05_05_0179 + 23022985-23023190,23024099-23024227,23024309-230245... 27 9.3
03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461 27 9.3
>09_06_0231 + 21733151-21734905
Length = 584
Score = 28.3 bits (60), Expect = 3.1
Identities = 14/28 (50%), Positives = 14/28 (50%)
Frame = -1
Query: 357 CLASPHGVGATMAAAVNCDTMLPATKFP 274
CL P GVGA CD M PAT P
Sbjct: 47 CLRLPLGVGAGGCRVCACDEMDPATAAP 74
>09_02_0338 + 7426999-7428322,7428390-7428646
Length = 526
Score = 27.9 bits (59), Expect = 4.0
Identities = 17/47 (36%), Positives = 20/47 (42%)
Frame = -1
Query: 201 LMESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAIRRYKSYYVD 61
LM C L HR P L + L A L+AI KSYY +
Sbjct: 397 LMVQHTRNCVTLPHRNPMLVVALLAATLGLVCLLLQAIYTMKSYYCE 443
>06_03_0832 +
25190755-25190960,25191869-25191997,25192079-25192301,
25192447-25192702,25193228-25193685,25193783-25194070,
25194143-25194874
Length = 763
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 251 SPAAQAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSLQDRTFSV 400
SP+A G A + Q + AA+ A +P +KHH + + +D T +V
Sbjct: 9 SPSAARVGGGSSAPDVEQQKSVAAVGASSPVSSSKHHHMAKA-EDGTITV 57
>06_03_0825 -
25109742-25110473,25110546-25110833,25110930-25110993,
25111855-25111912,25111913-25112168,25112310-25112532,
25112614-25112742,25113651-25113856
Length = 651
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 251 SPAAQAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSLQDRTFSV 400
SP+A G A + Q + AA+ A +P +KHH + + +D T +V
Sbjct: 9 SPSAARVGGGSSAPDVEQQKSVAAVGASSPVSSSKHHHMAKA-EDGTITV 57
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 86 RIARREQKLKEHGASSCISGKRGRRC 163
R+ARR + LK + C G R RRC
Sbjct: 11 RMARRRRWLKRRRSGHCRCGLRSRRC 36
>09_04_0269 + 16265191-16265472,16265574-16266149
Length = 285
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -1
Query: 198 MESTDPQCHILQHRRPRLPL 139
M T P C +L++ RPRLPL
Sbjct: 157 MARTGPLCLLLENPRPRLPL 176
>05_03_0564 -
15502458-15503303,15503394-15503474,15503572-15503620,
15503786-15503828,15504576-15504633,15504720-15504858,
15504980-15505107
Length = 447
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 200 SGSRARFQLSGNSGRKHSPAAQAY 271
SGSR R + GN+GR+ P Y
Sbjct: 311 SGSRLRVRSEGNAGRRGGPPGDLY 334
>05_03_0563 -
15493570-15494415,15494506-15494586,15494684-15494732,
15494898-15494940,15495688-15495745,15495832-15495970,
15496092-15496219
Length = 447
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 200 SGSRARFQLSGNSGRKHSPAAQAY 271
SGSR R + GN+GR+ P Y
Sbjct: 311 SGSRLRVRSEGNAGRRGGPPGDLY 334
>05_03_0562 -
15484733-15485578,15485669-15485749,15485847-15485895,
15486061-15486103,15486851-15486908,15486995-15487133,
15487255-15487382
Length = 447
Score = 27.1 bits (57), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 200 SGSRARFQLSGNSGRKHSPAAQAY 271
SGSR R + GN+GR+ P Y
Sbjct: 311 SGSRLRVRSEGNAGRRGGPPGDLY 334
>05_05_0179 +
23022985-23023190,23024099-23024227,23024309-23024531,
23024674-23024929,23025455-23025912,23026009-23026296,
23026369-23027100
Length = 763
Score = 26.6 bits (56), Expect = 9.3
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +2
Query: 251 SPAAQAYYGNLVAGSIVSQLTAAAMVAPTP*GDAKHHPFSTSLQDRTFSVLFGIKMH 421
SP+A G A + Q + AA+ A +P +KHH + + +D T +V G K H
Sbjct: 9 SPSAVRVGGVSSAPDVEQQKSVAAVGASSPVSSSKHHHMAKA-EDGTITV-NGDKQH 63
>03_05_0636 - 26307847-26307852,26308331-26308726,26308802-26309461
Length = 353
Score = 26.6 bits (56), Expect = 9.3
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +2
Query: 92 ARREQKLKEHG-ASSCISGKRGRRCCNIWHWGSVDSISG 205
A RE + ++G A + G R N W G DS+SG
Sbjct: 44 ALRESSVSQNGMAPPEPTAHEGHRASNSWSSGDTDSVSG 82
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,215,065
Number of Sequences: 37544
Number of extensions: 255548
Number of successful extensions: 726
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 712
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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