Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30132
         (453 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23806| Best HMM Match : zf-CCHC (HMM E-Value=0.0069)                28   4.2  
SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)                  27   7.3  
SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)                    27   7.3  

>SB_23806| Best HMM Match : zf-CCHC (HMM E-Value=0.0069)
          Length = 290

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 14/58 (24%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +2

Query: 116 EHGASSCIS-GKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSPAAQAYYGNLV 286
           EH A  C + G     C    HW  +  +    ++ + +GN+  ++    ++ Y NLV
Sbjct: 139 EHDAQRCPAYGSLCNYCSKPNHWSKICRLKQKYSQIRPTGNANARNQQQHRSQYPNLV 196


>SB_38160| Best HMM Match : Toxin_29 (HMM E-Value=3.7)
          Length = 534

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = -1

Query: 213 AREPL-MESTDPQCHILQHRRPRLPLMQLEAPCSFNFCSLRAI 88
           +REP    S  PQ H+L  +R  L + ++   CS   CS+  I
Sbjct: 57  SREPFDSRSKLPQKHLLNSKRRALAIAKILLACSPEHCSMSFI 99


>SB_19263| Best HMM Match : TAP42 (HMM E-Value=0.25)
          Length = 303

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 408 PNKTEKVRSWSDVENG*CLASPHGVGATMAAA 313
           P K +K R W D ++G C  +   +G T+AAA
Sbjct: 167 PEKLQKARDWDDWKDGLCGVA---IGYTVAAA 195


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,161
Number of Sequences: 59808
Number of extensions: 267302
Number of successful extensions: 685
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 685
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)