Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30132
         (453 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    32   0.22 
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical...    28   3.7  
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ...    28   3.7  
AF047663-7|AAC04448.1|  178|Caenorhabditis elegans Hypothetical ...    27   4.8  
AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical...    27   8.4  

>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 31.9 bits (69), Expect = 0.22
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
 Frame = +2

Query: 131  SCISGKRGRRC--CNIWHWGSVDSISGSRARFQLSGN 235
            +C SG +G RC  C   HWGS   + G+  R   +GN
Sbjct: 973  NCKSGYQGERCGECAQNHWGSPREVGGTCERCDCNGN 1009


>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = +2

Query: 116  EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSPAAQAYYG 277
            EH   SC+SG  G +C   C   +    D ISG     Q      + + P  + Y+G
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQPGWRGKKCNRPCLKGYFG 1250


>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
            protein Y64G10A.7 protein.
          Length = 1651

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
 Frame = +2

Query: 116  EHGASSCISGKRGRRC---CNIWHWGSVDSISGSRARFQLSGNSGRKHSPAAQAYYG 277
            EH   SC+SG  G +C   C   +    D ISG     Q      + + P  + Y+G
Sbjct: 1195 EHCEKSCVSGHYGAKCEETCECENGALCDPISG-HCSCQPGWRGKKCNRPCLKGYFG 1250


>AF047663-7|AAC04448.1|  178|Caenorhabditis elegans Hypothetical
           protein W09G12.6 protein.
          Length = 178

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 24/76 (31%), Positives = 30/76 (39%)
 Frame = +2

Query: 95  RREQKLKEHGASSCISGKRGRRCCNIWHWGSVDSISGSRARFQLSGNSGRKHSPAAQAYY 274
           RR++  +    S    G R R     W   S  S S S  R   S  S +  SPA  +  
Sbjct: 20  RRDRSNRRRNQSE--GGSRSRS--ESWLGSSGSSRSRSSGRSAASAGSSQAASPAGASAI 75

Query: 275 GNLVAGSIVSQLTAAA 322
           G+  AGS      AAA
Sbjct: 76  GSSQAGSSAGSPAAAA 91


>AL021487-10|CAA16357.2| 1592|Caenorhabditis elegans Hypothetical
           protein Y45F10B.10 protein.
          Length = 1592

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 328 YHGSSSQL*HNAAGH*ISVVCLCS 257
           YH +S QL     GH  +V CLCS
Sbjct: 896 YHIASEQLIGTFKGHTAAVTCLCS 919


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,046,634
Number of Sequences: 27780
Number of extensions: 198482
Number of successful extensions: 421
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)