Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30131
         (616 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q23RF4 Cluster: Cation channel family protein; n=1; Tet...    33   4.1  
UniRef50_A0CNP9 Cluster: Chromosome undetermined scaffold_22, wh...    33   4.1  
UniRef50_A2EFQ1 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q8HEI1 Cluster: NADH-ubiquinone oxidoreductase chain 5;...    33   7.1  

>UniRef50_Q23RF4 Cluster: Cation channel family protein; n=1;
           Tetrahymena thermophila SB210|Rep: Cation channel family
           protein - Tetrahymena thermophila SB210
          Length = 1736

 Score = 33.5 bits (73), Expect = 4.1
 Identities = 23/60 (38%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +1

Query: 214 FANKRQANHYW**-LLIIVFQDCIRLVYYH*HTAVKDFTKKLLSYLIYLCNFPVFFLIVY 390
           +  K   +HYW   +L IVF + I L+YY   T   D +  L    IY  N  +FFL VY
Sbjct: 500 YFEKISRSHYWSYFILFIVFSNTIALIYYSAATVYTDNSSSLDD--IY-TNIEIFFLSVY 556


>UniRef50_A0CNP9 Cluster: Chromosome undetermined scaffold_22, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_22,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 322

 Score = 33.5 bits (73), Expect = 4.1
 Identities = 30/105 (28%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
 Frame = +1

Query: 142 YIIEFKQRNFVI--CVILLKKNRNENFANKRQANHY-W**LLIIVFQDCIRLVYYH*HTA 312
           +I+   Q +F+I  CV  +    N+  A  R+ N Y W  L++++F   +   YY  H+ 
Sbjct: 20  FILISIQMSFLIISCVTFIILENNQTDAEYRRENLYKW--LILLLFS--LSQYYYAWHSI 75

Query: 313 VKDFTKKLLSYLIY-LCNFPVFFLIVYFIQ*KMFVYILYLVNNVC 444
           +K    +LL+YLI  +C      L  ++I     +    LV +VC
Sbjct: 76  IKKNMLELLAYLIISICTTTASTLRYFYISMNEELDHKILVQSVC 120


>UniRef50_A2EFQ1 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 807

 Score = 33.1 bits (72), Expect = 5.4
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = -3

Query: 224 LLAKFSFLFFFNNITQITKFRCLNSIIYVLK 132
           +L K +  FF +++  I +FRCL SI+Y+LK
Sbjct: 297 VLYKKNHEFFHDSLRNIGRFRCLKSIVYLLK 327


>UniRef50_Q8HEI1 Cluster: NADH-ubiquinone oxidoreductase chain 5;
           n=2; Varroa destructor|Rep: NADH-ubiquinone
           oxidoreductase chain 5 - Varroa destructor (honeybee
           mite)
          Length = 571

 Score = 32.7 bits (71), Expect = 7.1
 Identities = 16/44 (36%), Positives = 26/44 (59%)
 Frame = +1

Query: 319 DFTKKLLSYLIYLCNFPVFFLIVYFIQ*KMFVYILYLVNNVCSE 450
           +F  KLL YL YL  FP  F++   +   +F+  +Y + N+CS+
Sbjct: 457 NFMLKLLIYLFYL--FPYIFIMFELMLLSLFLMKMYFLYNLCSK 498


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,842,945
Number of Sequences: 1657284
Number of extensions: 7939836
Number of successful extensions: 14972
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14958
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 44392209541
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)