Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30131
         (616 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g42770.1 68416.m04468 F-box family protein contains F-box dom...    28   4.3  
At4g12790.2 68417.m02007 ATP-binding family protein contains Pfa...    27   7.5  
At4g12790.1 68417.m02006 ATP-binding family protein contains Pfa...    27   7.5  

>At3g42770.1 68416.m04468 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 532

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +3

Query: 285 ISLLSLTHCCQRFHKKAT*LFNLPM*LSSFFSDCLLHTIKNVRLYSI 425
           I  LS+T+ C  F      LFN P  +  ++SD + H   ++ L S+
Sbjct: 209 IKRLSVTYTCGYFVDYGLKLFNTPSVVDLYYSDYVRHKYPHMNLDSL 255


>At4g12790.2 68417.m02007 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 271

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 118 LFT--PFLSTYIIEFKQRNFVICVILL 192
           LFT  P L  ++   KQ+NF +CV+ L
Sbjct: 112 LFTHVPVLKNFVEHLKQKNFNVCVVYL 138


>At4g12790.1 68417.m02006 ATP-binding family protein contains Pfam
           domain, PF03029: Conserved hypothetical ATP binding
           protein
          Length = 271

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
 Frame = +1

Query: 118 LFT--PFLSTYIIEFKQRNFVICVILL 192
           LFT  P L  ++   KQ+NF +CV+ L
Sbjct: 112 LFTHVPVLKNFVEHLKQKNFNVCVVYL 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,076,784
Number of Sequences: 28952
Number of extensions: 171171
Number of successful extensions: 256
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1236350304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)