Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30130
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0 |Schizosacch... 126 3e-30
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 30 0.27
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 27 1.9
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 27 1.9
SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 3.4
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 26 4.5
SPBC428.17c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.9
SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating |S... 25 5.9
>SPCC18.14c |rpp0||60S acidic ribosomal protein Rpp0
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 312
Score = 126 bits (303), Expect = 3e-30
Identities = 59/85 (69%), Positives = 69/85 (81%)
Frame = +1
Query: 1 PARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 180
PARP AIAPL V +PA NTG+ P KTSFFQAL IPTKI++GTIEI +DVH++ KVG
Sbjct: 108 PARPNAIAPLDVFVPAGNTGMEPGKTSFFQALGIPTKITRGTIEITSDVHLVSKDAKVGP 167
Query: 181 SEATLLNMLNISPFSYGLVVKQVYD 255
SEATLLNMLNISPF+YG+ V +YD
Sbjct: 168 SEATLLNMLNISPFTYGMDVLTIYD 192
Score = 65.7 bits (153), Expect = 5e-12
Identities = 31/84 (36%), Positives = 42/84 (50%)
Frame = +3
Query: 258 GTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXX 437
G +F+PEILD+ EDL + + + A+SL YPTI S HS+ N +KNL+
Sbjct: 194 GNVFSPEILDVSEEDLIGHLLSAASIITAISLGANYPTILSVMHSVVNAYKNLVAVSLAT 253
Query: 438 XXXXXXXXXXKEFIKDPSKFAAVA 509
K F+ DPS F A
Sbjct: 254 EYTFEGTEQTKAFLADPSAFVVAA 277
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 29.9 bits (64), Expect = 0.27
Identities = 21/69 (30%), Positives = 34/69 (49%)
Frame = -1
Query: 482 LNELLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTE 303
L L+ G S+ SSDG + + D ++ + SWV ++R S IS S E+ +
Sbjct: 82 LRRLIQGNSYRIFGTGKSSDGLATYKLLLDELKSLTKSWVM-AKRFSDAISGSDSEVFED 140
Query: 302 ILWFDVQNF 276
FD++ F
Sbjct: 141 ---FDIEAF 146
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 27.1 bits (57), Expect = 1.9
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Frame = -1
Query: 494 LRWVLNE-LLDGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSL 318
LR ++N L D G + +C+ +D ++++T + +++S KS + N
Sbjct: 1012 LRPLVNRRLADAGIASRCEICEINDKNEIVKTRSQRIHSKKKAFLSLVPDKSIGVINRYK 1071
Query: 317 ELGTEI 300
EL TE+
Sbjct: 1072 ELATEL 1077
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = -1
Query: 137 MISIVPFEILVGMERAWKKEVFSGPRPVLWAGMTTDNGAMAP 12
+IS P + L+G+ AW E S R + T+ +AP
Sbjct: 289 IISFTPAKYLIGIGAAWFSEKLSRERKSISVDKTSKRAILAP 330
>SPCC2H8.04 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 266
Score = 26.2 bits (55), Expect = 3.4
Identities = 20/56 (35%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Frame = +1
Query: 142 DVHILKPGDKVGASEA-TLLNMLNISPFSYGLVVKQVYDLELFLHLKFWTSNQRIS 306
DV I KP K ++ ++ N + Y LV D FL KFW +QRIS
Sbjct: 107 DVGITKPHTKTKKLKSNSIFNYVRNGEVLYHLVSTTGGDT--FLRPKFWPQSQRIS 160
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 44 PPTTPASVQRKPLSSKLFPSLPKFQRVLLKSST 142
PPTT + + +P FQ++LLK ST
Sbjct: 309 PPTTRDPIYLGTMLRLFAEKIPVFQKILLKPST 341
>SPBC428.17c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 602
Score = 25.4 bits (53), Expect = 5.9
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 20 LPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLK 133
L HC + P A Q KPL S+ + SL KF+ LK
Sbjct: 532 LSHCFLNDPK---AFAQLKPLISQFYESLHKFKNFHLK 566
>SPBC660.16 |||phosphogluconate dehydrogenase, decarboxylating
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 492
Score = 25.4 bits (53), Expect = 5.9
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -3
Query: 144 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 22
IVD NS + R + L ++G L+ +GV GG + ++G
Sbjct: 101 IVDGGNSHYPDTTRRCEELAKKGILFVGSGVSGGEEGARYG 141
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,118
Number of Sequences: 5004
Number of extensions: 47376
Number of successful extensions: 130
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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