Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30130
(569 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0211 - 1601129-1601272,1601670-1602062,1602142-1602240,160... 118 3e-27
11_01_0210 - 1647922-1648065,1648459-1648851,1648930-1649028,164... 118 3e-27
08_01_0215 - 1714224-1714364,1714795-1715187,1715279-1715377,171... 118 3e-27
02_01_0076 + 540182-540583,541266-541475,541557-542018,542112-54... 30 1.1
06_01_0080 + 644021-645463 30 1.5
03_02_0966 + 12783515-12783901 30 1.5
07_01_0115 + 851505-852368,852611-852730,853000-853020,853253-85... 29 2.6
06_01_0486 - 3455030-3455770 29 3.4
04_04_1641 + 34993807-34994589,34994924-34995022,34995521-349956... 29 3.4
02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,290... 28 6.0
06_03_1180 + 28218386-28218649,28218725-28219202,28219309-282196... 27 8.0
02_04_0571 - 23963088-23963174,23963265-23963512,23963913-239639... 27 8.0
02_01_0348 - 2506007-2506909,2507003-2508120,2508230-2508883,250... 27 8.0
>12_01_0211 -
1601129-1601272,1601670-1602062,1602142-1602240,
1602920-1602988,1603071-1603328
Length = 320
Score = 118 bits (284), Expect = 3e-27
Identities = 54/85 (63%), Positives = 66/85 (77%)
Frame = +1
Query: 1 PARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 180
PAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+
Sbjct: 113 PARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGS 172
Query: 181 SEATLLNMLNISPFSYGLVVKQVYD 255
SE+ LL L I PFSYGLV+ VYD
Sbjct: 173 SESALLAKLGIRPFSYGLVITNVYD 197
Score = 95.9 bits (228), Expect = 2e-20
Identities = 44/86 (51%), Positives = 58/86 (67%)
Frame = +3
Query: 255 SGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXX 434
SG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 198 SGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVE 257
Query: 435 XXXXXXXXXXXKEFIKDPSKFAAVAP 512
KE++KDPSKFA AP
Sbjct: 258 TEYSYPHADKIKEYLKDPSKFAVAAP 283
>11_01_0210 -
1647922-1648065,1648459-1648851,1648930-1649028,
1649706-1649774,1649877-1650134
Length = 320
Score = 118 bits (284), Expect = 3e-27
Identities = 54/85 (63%), Positives = 66/85 (77%)
Frame = +1
Query: 1 PARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 180
PAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+
Sbjct: 113 PARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGS 172
Query: 181 SEATLLNMLNISPFSYGLVVKQVYD 255
SE+ LL L I PFSYGLV+ VYD
Sbjct: 173 SESALLAKLGIRPFSYGLVITNVYD 197
Score = 93.1 bits (221), Expect = 1e-19
Identities = 43/85 (50%), Positives = 57/85 (67%)
Frame = +3
Query: 255 SGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXX 434
SG++F+PE+LD+ EDL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 198 SGSVFSPEVLDLTEEDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVE 257
Query: 435 XXXXXXXXXXXKEFIKDPSKFAAVA 509
KE++KDPSKFA A
Sbjct: 258 TEYSYPHADKIKEYLKDPSKFAVAA 282
>08_01_0215 -
1714224-1714364,1714795-1715187,1715279-1715377,
1716248-1716316,1716408-1716665
Length = 319
Score = 118 bits (284), Expect = 3e-27
Identities = 54/85 (63%), Positives = 66/85 (77%)
Frame = +1
Query: 1 PARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 180
PAR G +AP+ VV+P NTGL P +TSFFQ L+IPTKI+KGT+EII V ++K GDKVG+
Sbjct: 113 PARVGLVAPVDVVVPPGNTGLDPSQTSFFQVLNIPTKINKGTVEIITPVELIKKGDKVGS 172
Query: 181 SEATLLNMLNISPFSYGLVVKQVYD 255
SE+ LL L I PFSYGLV+ VYD
Sbjct: 173 SESALLAKLGIRPFSYGLVITNVYD 197
Score = 94.7 bits (225), Expect = 5e-20
Identities = 43/86 (50%), Positives = 58/86 (67%)
Frame = +3
Query: 255 SGTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXX 434
SG++F+PE+LD+ +DL KF +GV+ VA++SLAI YPTIA+APH NG+KN+L
Sbjct: 198 SGSVFSPEVLDLTEDDLMEKFASGVSMVASVSLAISYPTIAAAPHMFLNGYKNVLAVAVE 257
Query: 435 XXXXXXXXXXXKEFIKDPSKFAAVAP 512
KE++KDPSKFA AP
Sbjct: 258 TEYSYPHADKIKEYLKDPSKFAVAAP 283
>02_01_0076 +
540182-540583,541266-541475,541557-542018,542112-542222,
542309-542488,543083-543367,544581-544701,544802-544923
Length = 630
Score = 30.3 bits (65), Expect = 1.1
Identities = 36/140 (25%), Positives = 61/140 (43%), Gaps = 6/140 (4%)
Frame = -1
Query: 455 FFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTEILWFDVQNF 276
FFK CDS D +++ G +G S VS+ + SS++ + T+ ++ +F
Sbjct: 493 FFKGINCDSHDDYVDIQSTGAISQGEQPSLVSSPIKMSSHLEQND---DTQETLQNIASF 549
Query: 275 RCKNSSRSYTC---LTTRPYENGEMFNMLRRVASEAPTLSPGF---KMCTSLMISIVPFE 114
+ S R T R N N L ++ E +SP F ++ S +VP E
Sbjct: 550 QVVMSERGKVVGFQPTNRLAVNHWATNPLTKLLYEGRKISPAFLEPRLRISRPAKVVPVE 609
Query: 113 ILVGMERAWKKEVFSGPRPV 54
+L+ + + F+ RPV
Sbjct: 610 LLMSVN---PESFFALVRPV 626
>06_01_0080 + 644021-645463
Length = 480
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -3
Query: 144 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGND 37
I+D N N R K++EERG L+ GV GG +
Sbjct: 100 IIDGGNEWYENTERREKAMEERGLLYLGMGVSGGEE 135
>03_02_0966 + 12783515-12783901
Length = 128
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +3
Query: 321 AGVANVAALSLAIGYPTIASAPHSIANGFKNLL 419
AG+A VAA++ A+ P +A A +++ KN L
Sbjct: 67 AGIAAVAAVAAALAVPEVAEAAPALSPSLKNFL 99
>07_01_0115 +
851505-852368,852611-852730,853000-853020,853253-853369,
853466-853555,853730-853837,853897-853932,853933-854022
Length = 481
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 294 PEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFK 410
PE RA F AG A V A +P A+A +S GF+
Sbjct: 35 PEKKRASFAAGAAAVRAKVCDARWPASAAAANSAPYGFR 73
>06_01_0486 - 3455030-3455770
Length = 246
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = +2
Query: 11 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKF 115
P P P C S PP TP + R P + PS P +
Sbjct: 66 PPPSPRCPSCHPPYTPPT-PRPPPTPPYVPSPPPY 99
>04_04_1641 +
34993807-34994589,34994924-34995022,34995521-34995648,
34996095-34996235,34996456-34996542,34996627-34996780,
34998569-34998628,34999019-34999447,34999524-34999819,
35000278-35000407,35000690-35001187
Length = 934
Score = 28.7 bits (61), Expect = 3.4
Identities = 20/51 (39%), Positives = 24/51 (47%)
Frame = +2
Query: 11 PVPLPHCQSSFPPTTPASVQRKPLSSKLFPSLPKFQRVLLKSSTMYTS*SP 163
P P PH S PP P S + LSSKL P P+ S+T T+ P
Sbjct: 51 PPPPPHRPSPSPPPNPLS-SKLWLSSKLSPPPPETLEQPEPSTTTTTTTPP 100
>02_01_0399 - 2905026-2905406,2905522-2905630,2905809-2907475,
2907650-2907790,2907870-2908043,2908577-2908851,
2909592-2909755,2910409-2910536,2910628-2910734,
2911747-2911880,2912266-2912441,2912530-2914257,
2915084-2915239,2915328-2915486,2915581-2915751,
2915931-2916047,2916417-2916473,2916565-2916680,
2916790-2916916,2917862-2917945
Length = 2056
Score = 27.9 bits (59), Expect = 6.0
Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%)
Frame = -1
Query: 467 DGGSFFKLNLCDSSDGQKVLETIGDGMRG*SNSWVSNSQRKSSY-ISNSSLELGTEI--- 300
DGG+ +K +DG E G G G SW ++ +K S+ N E ++
Sbjct: 1507 DGGASWKKQSSTQNDGNSWKENKGRGSNG--GSWEKDNAQKGSWGRGNDEAENNNDVQNK 1564
Query: 299 LWFDVQNFRCKNSSRSYTCLTTRPYEN 219
W V ++ +S+ +T P +N
Sbjct: 1565 SWETVAADAHASTEKSWGNVTASPSDN 1591
>06_03_1180 +
28218386-28218649,28218725-28219202,28219309-28219697,
28219785-28220426,28220466-28221368
Length = 891
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Frame = -1
Query: 362 SNSQRKSSYISNSSLELGTEILWFD------VQNFRCKNSSRSYTCLTTRPYENGEMFNM 201
S S +K +S S+ L E V NF C++ + L RP +G
Sbjct: 169 SFSGKKPKAVSEPSVSLSPEFTAIQPRIEELVSNFSCRDLVEEFVLLKIRPLSSGWDIT- 227
Query: 200 LRRVASEAPTLSPGFKMCTSLMI 132
L + + P+ P F + + L+I
Sbjct: 228 LGEIPEDCPSSLPPFVVSSDLVI 250
>02_04_0571 -
23963088-23963174,23963265-23963512,23963913-23963999,
23964023-23964143,23964257-23964366,23964464-23964635,
23965615-23965648,23965830-23965849
Length = 292
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/38 (26%), Positives = 18/38 (47%)
Frame = +2
Query: 269 CT*NSGHQTRGSPCQVPSWXXXXXXXFFGYWIPNYCFS 382
C+ + GH +GS C++ +W W+ + FS
Sbjct: 241 CSHSGGHALQGSECELTTWSATKQQKSGKIWLKDIIFS 278
>02_01_0348 -
2506007-2506909,2507003-2508120,2508230-2508883,
2508920-2509046
Length = 933
Score = 27.5 bits (58), Expect = 8.0
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Frame = -1
Query: 362 SNSQRKSSYISNSSLELGTEILWFD------VQNFRCKNSSRSYTCLTTRPYENGEMFNM 201
S S +K +S S+ L E V NF C++ + L RP +G
Sbjct: 182 SFSGKKPKAVSEPSVSLSPEFTAIQPRIEELVSNFSCRDLVEEFVLLKIRPLSSGWDIT- 240
Query: 200 LRRVASEAPTLSPGFKMCTSLMI 132
L + + P+ P F + + L+I
Sbjct: 241 LGEIPEDCPSSLPPFVVSSDLVI 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,655,854
Number of Sequences: 37544
Number of extensions: 344081
Number of successful extensions: 928
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 896
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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