Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30130
         (569 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)         95   4e-20
SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)                        32   0.29 
SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)                  30   1.5  
SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)                 28   6.2  
SB_19463| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.2  
SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)               27   8.2  

>SB_15432| Best HMM Match : Ribosomal_L10 (HMM E-Value=3.1e-37)
          Length = 261

 Score = 95.1 bits (226), Expect = 4e-20
 Identities = 42/60 (70%), Positives = 52/60 (86%)
 Frame = +1

Query: 1   PARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 180
           PA+ G IAP+ V +PA NTGLGPEKTSFFQAL+IPTKI++GTIEIINDVH++K  +K+ A
Sbjct: 92  PAKAGVIAPIDVFVPAGNTGLGPEKTSFFQALAIPTKIARGTIEIINDVHLIKKDEKLKA 151


>SB_46306| Best HMM Match : 6PGD (HMM E-Value=0)
          Length = 870

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 17/41 (41%), Positives = 25/41 (60%)
 Frame = -3

Query: 144 IVDDFNSTL*NFGRDGKSLEERGFLWTEAGVVGGNDD*QWG 22
           I+D  NS   +  R  K+LEERG L+  +GV GG +  ++G
Sbjct: 144 IIDGGNSEYKDSMRRCKALEERGLLFVGSGVSGGEEGARYG 184


>SB_17157| Best HMM Match : Kinesin (HMM E-Value=0.59)
          Length = 2053

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 176  PTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPR 60
            P   P F+ C +L+ ++  ++    M RAW+KEV S  R
Sbjct: 1843 PRNVPNFRACCALVSALSGYQY---MRRAWRKEVISSQR 1878


>SB_47997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 137

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +2

Query: 11 PVPLPHCQSSFPPTTPASV 67
          PVP PH ++S  PT P SV
Sbjct: 16 PVPRPHARASASPTHPTSV 34


>SB_19577| Best HMM Match : SERTA (HMM E-Value=7.8e-10)
          Length = 543

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 20/50 (40%), Positives = 23/50 (46%)
 Frame = -1

Query: 185 SEAPTLSPGFKMCTSLMISIVPFEILVGMERAWKKEVFSGPRPVLWAGMT 36
           S  P L P      S    I+P EILVG+ER  +K V  G    L   MT
Sbjct: 258 SNGPPLEPKVWDLESAEWPIIPGEILVGLER--RKPVLKGLLITLCENMT 305


>SB_19463| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +1

Query: 205 LNISPFSYGLVVKQVYDLELFLHLKFW 285
           +++  + Y  ++K ++ L LFL++KFW
Sbjct: 1   MHLISYHYRTILKLLFALTLFLYVKFW 27


>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 239 LSRYMIWNYFCT*NSGHQTRGSPCQVPSW 325
           LSR   +   CT N+  + R +PC++ SW
Sbjct: 335 LSRKCGYTNRCTLNTTQEERDAPCKISSW 363


>SB_671| Best HMM Match : Pneumo_matrix (HMM E-Value=3.9)
          Length = 907

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 3/59 (5%)
 Frame = +2

Query: 35  SSFPPTTPASVQRKPLSSKL---FPSLPKFQRVLLKSSTMYTS*SPVTRLELLKPPFST 202
           S+ P   PA   +KP+ ++     PS P  +RVL+ SS ++     ++ +E+   PFST
Sbjct: 396 STTPRNKPAKPAKKPVVARTDHGCPS-PSAKRVLVSSSFVHLDGKSLSTIEVHFLPFST 453


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,026,389
Number of Sequences: 59808
Number of extensions: 359628
Number of successful extensions: 929
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)