Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30130
         (569 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical pr...   141   3e-34
AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical ...    28   4.1  
U97593-6|AAB52879.2|  925|Caenorhabditis elegans Prion-like-(q/n...    28   5.4  
Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical pr...    27   9.5  
Z48717-7|CAA88605.1|  518|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z79754-9|CAB02098.1|  312|Caenorhabditis elegans Hypothetical
           protein F25H2.10 protein.
          Length = 312

 Score =  141 bits (342), Expect = 3e-34
 Identities = 63/85 (74%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   PARPGAIAPLSVVIPAHNTGLGPEKTSFFQALSIPTKISKGTIEIINDVHILKPGDKVGA 180
           PA+ GAIAP  V +P  NTG+GPEKTSFFQAL IPTKI++GTIEI+NDVH++K GDKVGA
Sbjct: 110 PAKAGAIAPCDVKLPPQNTGMGPEKTSFFQALQIPTKIARGTIEILNDVHLIKEGDKVGA 169

Query: 181 SEATLLNMLNISPFSYGLVVKQVYD 255
           SE+ LLNML ++PFSYGLVV+QVYD
Sbjct: 170 SESALLNMLGVTPFSYGLVVRQVYD 194



 Score = 91.5 bits (217), Expect = 4e-19
 Identities = 42/85 (49%), Positives = 56/85 (65%)
 Frame = +3

Query: 258 GTIFAPEILDIKPEDLRAKFQAGVANVAALSLAIGYPTIASAPHSIANGFKNLLXXXXXX 437
           GT++ PE+LD+  E+LR +F +GV NVA++SLA+ YPT+AS  HS+ANG +N+L      
Sbjct: 196 GTLYTPEVLDMTTEELRKRFLSGVRNVASVSLAVNYPTLASVAHSLANGLQNMLGVAAVT 255

Query: 438 XXXXXXXXXXKEFIKDPSKFAAVAP 512
                     K FI DPSKFAA AP
Sbjct: 256 DVSFKEAETIKAFIADPSKFAAAAP 280


>AF000195-2|AAC24267.1|  316|Caenorhabditis elegans Hypothetical
           protein C32F10.4 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = +2

Query: 14  VPLPHCQSSFPPTTPASVQRKPLSSKLFPSLP-KFQRVLLKSSTMYTS 154
           VP P   S  PP    +    P+SS+  P +P K Q V  +SST   S
Sbjct: 207 VPTPMSPSGMPPPPRYTAYAPPMSSQTAPPIPTKQQPVDSESSTTSAS 254


>U97593-6|AAB52879.2|  925|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 22,
           isoform c protein.
          Length = 925

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = -1

Query: 377 SNSWVSNSQRKSSYISNSSLELGTEILWFDVQNFRCKNSSRSYTCLTTRPYE 222
           SN++ + +   S+Y S SS      I    VQN++  N ++SY+  TT  ++
Sbjct: 567 SNNYSNQNYSSSAYNSQSSQHQTKSI---PVQNYQSSNYNKSYSSQTTTQHQ 615


>Z82262-4|CAE17770.1|  679|Caenorhabditis elegans Hypothetical
           protein C43F9.9 protein.
          Length = 679

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
 Frame = -1

Query: 440 LCDSSDGQ--KVLETIGDGMRG*SNSWVSNSQRKSSYISNSSLELGTEILWFDVQNFR-C 270
           + D SD +  ++LE+  +G+ G +N  +   QR  + ++    E+  E L F    F+  
Sbjct: 202 IMDDSDDEVKRILESGEEGLVGKNNRTLKTQQRNHTEVTLEEEEINLEDLQFKSYQFKPG 261

Query: 269 KNSSRSY 249
           K+  R+Y
Sbjct: 262 KSKIRTY 268


>Z48717-7|CAA88605.1|  518|Caenorhabditis elegans Hypothetical
           protein T10B9.3 protein.
          Length = 518

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 17/35 (48%), Positives = 20/35 (57%)
 Frame = -1

Query: 377 SNSWVSNSQRKSSYISNSSLELGTEILWFDVQNFR 273
           S S+ +NS RK   + NS  E GTEILW   Q  R
Sbjct: 131 SPSFSNNSLRK---VRNSVQECGTEILWNIEQKVR 162


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,585,595
Number of Sequences: 27780
Number of extensions: 271356
Number of successful extensions: 838
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 778
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)