Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30129
         (782 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5RIU8 Cluster: Novel protein similar to vertebrate dis...    36   1.5  
UniRef50_Q6NNV9 Cluster: RH24371p; n=9; Endopterygota|Rep: RH243...    34   3.5  
UniRef50_A1ZEY2 Cluster: Transcriptional regulator; n=5; Bactero...    34   4.6  
UniRef50_A5ZIC6 Cluster: Putative uncharacterized protein; n=1; ...    33   6.1  
UniRef50_Q28Q79 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  
UniRef50_A2FF11 Cluster: Putative uncharacterized protein; n=1; ...    33   8.1  

>UniRef50_Q5RIU8 Cluster: Novel protein similar to vertebrate
           discoidin domain receptor family, member 2; n=4; Danio
           rerio|Rep: Novel protein similar to vertebrate discoidin
           domain receptor family, member 2 - Danio rerio
           (Zebrafish) (Brachydanio rerio)
          Length = 804

 Score = 35.5 bits (78), Expect = 1.5
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 432 PTFPEGLIKFSMITWSRLLTGLPTLAKYLDQLKSFGPHS 316
           P  P  L K  M  WSR +T  P+  K    L++F PHS
Sbjct: 766 PLCPSSLFKLMMRCWSRDITDRPSFNKLHQALRTFAPHS 804


>UniRef50_Q6NNV9 Cluster: RH24371p; n=9; Endopterygota|Rep: RH24371p
           - Drosophila melanogaster (Fruit fly)
          Length = 669

 Score = 34.3 bits (75), Expect = 3.5
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = +2

Query: 269 LYLKMKATSPNGQIPEEWGPKDLSWSKYLASVG 367
           L + +   +P   +PE +G  +LSW+KYL S+G
Sbjct: 294 LMIPISEINPAASLPEAFGQLNLSWAKYLISIG 326


>UniRef50_A1ZEY2 Cluster: Transcriptional regulator; n=5;
           Bacteroidetes|Rep: Transcriptional regulator -
           Microscilla marina ATCC 23134
          Length = 144

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 21/53 (39%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +1

Query: 529 KKLALLYKNYCRPSEYY-----ASFGNFYICSICPEYVGGASFANIVEHFRKQ 672
           KK  + YK Y +  EYY     +++ NFY+ S    Y GG SF  +V  F KQ
Sbjct: 65  KKKFVGYKAYGKTHEYYPLVDKSNYSNFYLNSFIGRYFGG-SFEKMVSFFVKQ 116


>UniRef50_A5ZIC6 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides caccae ATCC 43185|Rep: Putative
           uncharacterized protein - Bacteroides caccae ATCC 43185
          Length = 405

 Score = 33.5 bits (73), Expect = 6.1
 Identities = 17/49 (34%), Positives = 27/49 (55%)
 Frame = +2

Query: 263 DDLYLKMKATSPNGQIPEEWGPKDLSWSKYLASVGKPVNNRDHVIIENF 409
           D  Y K +    NG  PE   P+D++   Y+  VG  V+  D+VI+E++
Sbjct: 254 DRCYEKYRINITNGGYPER--PEDMNSDTYIKIVGTKVHMADYVILEDY 300


>UniRef50_Q28Q79 Cluster: Putative uncharacterized protein; n=1;
           Jannaschia sp. CCS1|Rep: Putative uncharacterized
           protein - Jannaschia sp. (strain CCS1)
          Length = 163

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 206 DRRSDHTPLIRRETLSLLSDDLYLKMKATSPNGQIPEE 319
           D  SD T L R E LS LSD L   +   +P+G+IP +
Sbjct: 119 DHLSDRTGLSREELLSRLSDSLPHTVNRFTPDGRIPND 156


>UniRef50_A2FF11 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 652

 Score = 33.1 bits (72), Expect = 8.1
 Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 3/89 (3%)
 Frame = -3

Query: 498 RIWLNRTCRGPFSVISQQVQKLPTFP---EGLIKFSMITWSRLLTGLPTLAKYLDQLKSF 328
           R+WL    +  FS +SQ ++  P  P   E   KF  +  +  L  +PT    LD +   
Sbjct: 58  RVWLRNNQKN-FSQLSQGMEMQPLLPPTLESTPKFVQLPSAPQLPNIPTHPSLLDDISIS 116

Query: 327 GPHSSGICPFGLVAFIFKYKSSESRLSVS 241
             ++S   P   ++ I   KS    LSVS
Sbjct: 117 SNNNSFNIPPANMSLINDTKSQTKELSVS 145


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 794,573,861
Number of Sequences: 1657284
Number of extensions: 16523359
Number of successful extensions: 49503
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 47413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49491
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 66262109095
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)