Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30129
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    27   2.3  
SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase Idi1|S...    27   3.0  
SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    27   4.0  
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|...    26   7.0  
SPBC1685.07c |||amino acid transporter |Schizosaccharomyces pomb...    25   9.3  

>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 460 AERAPTGPVQPYPSEEDLRNAAPKKLALLYKN 555
           A   PT PV  YPS E + NA      LL K+
Sbjct: 655 ASGTPTNPVHSYPSLESIINALTPSDMLLIKD 686


>SPBC106.15 |idi1||isopentenyl-diphosphate delta-isomerase
           Idi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 227

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 555 VFVEEGELLWCRVT--KVFF*RIWLNRTCRGPFSVISQQVQKLPTFPEGL 412
           +F E+  LL  +    K+ F  +W N  C  P  V  ++   LP   EG+
Sbjct: 59  IFDEQNRLLLQQRAEEKITFPSLWTNTCCSHPLDVAGERGNTLPEAVEGV 108


>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = -3

Query: 723 FHGQDGEILGYRSPRCSLLSKMFD--DVRERSTAHVFGANRTNVKVTERRVVLGGAAVVF 550
           F  Q G  L   S   S+L+   D  D+RER    V  +N++   VT   + +GGA  V 
Sbjct: 548 FTRQTGFDLSVASECMSVLALATDLKDMRERLGRMVVASNKSGEPVTADDLGVGGALTVL 607

Query: 549 VEE 541
           +++
Sbjct: 608 LKD 610


>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
           Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 278

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 374 PVCPRWPNTWTSSSPLVPILQEF 306
           PVC   PN +  + P +PI+Q F
Sbjct: 61  PVCIYPPNIYLYAKPTMPIIQSF 83


>SPBC1685.07c |||amino acid transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = -2

Query: 475 SGPFQRHIAAGAEIAYFPGRFNKVLYDNVVAVVNRFAHAGQILGPAQVLWSPF 317
           SGP   HI      +      N +L   ++++ N F   G + G   +++S F
Sbjct: 9   SGPADVHIGKAGFFSSVINLANTILGAGILSLPNAFTKTGLLFGCLTIVFSAF 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,252,430
Number of Sequences: 5004
Number of extensions: 68675
Number of successful extensions: 242
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)