Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30129
         (782 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447           29   3.2  
01_01_0227 + 1933247-1933699                                           29   3.2  
01_05_0271 + 20276965-20278674                                         28   7.3  
01_01_1229 + 9932535-9932594,9933018-9933095,9933177-9933228,993...    28   7.3  
08_02_0227 - 14485676-14487316                                         28   9.6  
04_01_0492 + 6476586-6476873,6477414-6477686,6477769-6477948,647...    28   9.6  
01_06_1249 - 35714645-35716003,35716700-35716761,35717007-357171...    28   9.6  

>03_02_0298 - 7204808-7205477,7206421-7206510,7207945-7208447
          Length = 420

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 598 YICSICPEYVGGASFANIVEHFRKQRTPWRPVAQNFSVLAVKQRNSTKQFSGTG 759
           Y+C IC +  G     N+  H R+ + PWR V +  +  A +   +     G G
Sbjct: 31  YVCEICGQ--GFQREQNLQMHRRRHKVPWRLVKRPAAATAAEDGGAAGGGGGAG 82


>01_01_0227 + 1933247-1933699
          Length = 150

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = -3

Query: 681 RCSLLSKMFDDVRERSTAHVFGANRTNVKVTERRVVL--GGAAVV 553
           RC +L+ +  D +E  TAHVF A+   V+  + +V +  GG  V+
Sbjct: 33  RCPVLTNVRVDWKETPTAHVFTADLPGVRKDQAKVEVEDGGVLVI 77


>01_05_0271 + 20276965-20278674
          Length = 569

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = -3

Query: 414 LIKFSMITWSRLLTGLPTLAKYLDQLKSFGPH-SSGICPFG-LVAFIFKYKSSESRLSVS 241
           L+   ++TWS L+TGL  + KY +    F    +SG  P   LVA +    +S   +S S
Sbjct: 281 LLDADLVTWSSLITGLLHICKYEESFGLFRQMCNSGRRPDSILVASLLSACASMVNISYS 340

Query: 240 RLI 232
           + I
Sbjct: 341 KEI 343


>01_01_1229 +
           9932535-9932594,9933018-9933095,9933177-9933228,
           9933377-9933648,9934016-9934246,9934408-9934554
          Length = 279

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -3

Query: 282 IFKYKSSESRLSVSRLISGVWSLRRSLCFVCRAG 181
           IFK K + ++  V  ++SG+W      CF+   G
Sbjct: 113 IFKQKGNAAKADVFHVLSGMWKTPAERCFLWLGG 146


>08_02_0227 - 14485676-14487316
          Length = 546

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = -3

Query: 486 NRTCRGPFSVISQQVQKLPTFPEGLIKFSMITWSRLLTGLPTLAKYLDQL 337
           N +     + I + +Q+ P   E  I+FS   WS+ L   P LA YL+ +
Sbjct: 367 NGSAAAAATAIGELLQRCPVIRELWIRFS---WSKYLHESPDLAGYLESM 413


>04_01_0492 +
           6476586-6476873,6477414-6477686,6477769-6477948,
           6478436-6478696,6479171-6479303,6479404-6479494,
           6479921-6480023,6480557-6480660,6480809-6480902,
           6480985-6481140,6481224-6481286,6481388-6481453,
           6481670-6481870,6481999-6482076,6482165-6482284,
           6482382-6482462,6482548-6482633,6482920-6483031,
           6483093-6483170,6483306-6483482
          Length = 914

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
 Frame = -3

Query: 354 KYLDQLKSF--GPHSSGICPFGLVAFIFKYKSSE 259
           KY+D + SF  G H SGI PFG +  +  Y   E
Sbjct: 286 KYVDIVGSFQTGYHISGIAPFGDLLVVLAYIPEE 319


>01_06_1249 -
           35714645-35716003,35716700-35716761,35717007-35717181,
           35717276-35717301,35717917-35717983,35719803-35719945,
           35720337-35720349
          Length = 614

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = +3

Query: 111 SIKEMNAKFLSGHNITATASGLNCRLCKQNIETAEATILHLLDE 242
           +I E+  K  +     A A  L+   CKQ +ET+ ATI  LL +
Sbjct: 301 TIDELRVKLKASEEAEAQARALH-EECKQQLETSRATIDSLLTD 343


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,823,245
Number of Sequences: 37544
Number of extensions: 469204
Number of successful extensions: 1382
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1382
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)