Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30129
(782 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19800.3 68414.m02479 expressed protein contains Pfam PF02405... 31 0.65
At1g19800.2 68414.m02478 expressed protein contains Pfam PF02405... 31 0.65
At1g19800.1 68414.m02477 expressed protein contains Pfam PF02405... 31 0.65
At4g10440.1 68417.m01716 dehydration-responsive family protein s... 29 2.6
At1g20060.1 68414.m02511 kinesin motor protein-related 29 3.5
At1g33170.1 68414.m04096 dehydration-responsive family protein s... 29 4.6
At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) simi... 29 4.6
At5g18880.1 68418.m02243 expressed protein ; expression supporte... 28 6.1
At5g06950.2 68418.m00786 bZIP transcription factor HBP-1b homolo... 28 6.1
At5g06950.1 68418.m00785 bZIP transcription factor HBP-1b homolo... 28 6.1
At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) iden... 28 6.1
At3g12250.3 68416.m01530 bZIP family transcription factor contai... 28 6.1
At3g12250.2 68416.m01529 bZIP family transcription factor contai... 28 6.1
At3g12250.1 68416.m01528 bZIP family transcription factor contai... 28 6.1
At1g08700.1 68414.m00966 presenilin family protein similar to SP... 28 6.1
At4g29420.1 68417.m04201 F-box family protein contains F-box Pfa... 28 8.0
At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containi... 28 8.0
At1g14900.1 68414.m01781 high-mobility-group protein / HMG-I/Y p... 28 8.0
>At1g19800.3 68414.m02479 expressed protein contains Pfam PF02405:
Domain of unknown function DUF140; similar to TOLUENE
TOLERANCE PROTEIN TTG2B {Brucella melitensis 16M}
(GI:17982923)
Length = 350
Score = 31.5 bits (68), Expect = 0.65
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -3
Query: 384 RLLTGLPTLAKYLDQLKSFGPHSSGIC----PFGLVAFIFKYKSSESRLSVSRLISGVWS 217
R+L G L QL+ GP S G+C F +AF ++ +RL ++R I GV +
Sbjct: 115 RILKGKIHWRNTLQQLERTGPKSLGVCLLTSTFVGMAFTIQFVREFTRLGLNRSIGGVLA 174
Query: 216 L 214
L
Sbjct: 175 L 175
>At1g19800.2 68414.m02478 expressed protein contains Pfam PF02405:
Domain of unknown function DUF140; similar to TOLUENE
TOLERANCE PROTEIN TTG2B {Brucella melitensis 16M}
(GI:17982923)
Length = 350
Score = 31.5 bits (68), Expect = 0.65
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -3
Query: 384 RLLTGLPTLAKYLDQLKSFGPHSSGIC----PFGLVAFIFKYKSSESRLSVSRLISGVWS 217
R+L G L QL+ GP S G+C F +AF ++ +RL ++R I GV +
Sbjct: 115 RILKGKIHWRNTLQQLERTGPKSLGVCLLTSTFVGMAFTIQFVREFTRLGLNRSIGGVLA 174
Query: 216 L 214
L
Sbjct: 175 L 175
>At1g19800.1 68414.m02477 expressed protein contains Pfam PF02405:
Domain of unknown function DUF140; similar to TOLUENE
TOLERANCE PROTEIN TTG2B {Brucella melitensis 16M}
(GI:17982923)
Length = 350
Score = 31.5 bits (68), Expect = 0.65
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Frame = -3
Query: 384 RLLTGLPTLAKYLDQLKSFGPHSSGIC----PFGLVAFIFKYKSSESRLSVSRLISGVWS 217
R+L G L QL+ GP S G+C F +AF ++ +RL ++R I GV +
Sbjct: 115 RILKGKIHWRNTLQQLERTGPKSLGVCLLTSTFVGMAFTIQFVREFTRLGLNRSIGGVLA 174
Query: 216 L 214
L
Sbjct: 175 L 175
>At4g10440.1 68417.m01716 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 633
Score = 29.5 bits (63), Expect = 2.6
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 5/83 (6%)
Frame = +2
Query: 191 QTKHRDRRSDHTPLIRRETLSLLSDDLYLKMKATSPNGQIPEEW-GPKDLSWSKYL---- 355
+ + R RR D + RE + D+L + PN +IP +W +D +W +
Sbjct: 107 EDRQRGRRFDRNMMKYRERHCPVKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKE 166
Query: 356 ASVGKPVNNRDHVIIENFIKPSG 424
SV K V N V + F P G
Sbjct: 167 LSVEKAVQNWIQVEGDRFRFPGG 189
>At1g20060.1 68414.m02511 kinesin motor protein-related
Length = 951
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +2
Query: 278 KMKATSPNGQIPEEWGPKDLSWSKYLASVGKPVNNRDHVIIENFIK 415
K+K ++P ++ P D S S L V + N R+H+I+ NF K
Sbjct: 485 KIKLSAPKTSQGKKADPTDRS-SPRLEHVAQDKNEREHIIMRNFSK 529
>At1g33170.1 68414.m04096 dehydration-responsive family protein
similar to early-responsive to dehydration stress ERD3
protein [Arabidopsis thaliana] GI:15320410; contains
Pfam profile PF03141: Putative methyltransferase
Length = 639
Score = 28.7 bits (61), Expect = 4.6
Identities = 23/83 (27%), Positives = 35/83 (42%), Gaps = 5/83 (6%)
Frame = +2
Query: 191 QTKHRDRRSDHTPLIRRETLSLLSDDLYLKMKATSPNGQIPEEW-GPKDLSWSKYL---- 355
+ + R RR D + RE D+L + PN +IP +W +D +W +
Sbjct: 124 EDRERGRRFDRNMMKYRERHCPSKDELLYCLIPPPPNYKIPFKWPQSRDYAWYDNIPHKE 183
Query: 356 ASVGKPVNNRDHVIIENFIKPSG 424
S+ K + N V E F P G
Sbjct: 184 LSIEKAIQNWIQVEGERFRFPGG 206
>At1g08960.1 68414.m00996 cation exchanger, putative (CAX11) similar
to sodium/calcium exchanger protein [Mus musculus]
gi|13925661|gb|AAK49407; Ca2+:Cation Antiporter (CaCA)
Family member PMID:11500563
Length = 415
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -2
Query: 253 AKCFSSNKWSMVASAVSMFCLQSRQLSPDAVAVML*PERNFAFISLMLSIVVSLI 89
A CF+ ++M+ S +Q+ + PDA + AF+ L+LS++ SL+
Sbjct: 325 AGCFAGPMFNMLVGLGSALVMQTANVYPDAYKLGFHVGIVIAFVFLLLSLMGSLL 379
>At5g18880.1 68418.m02243 expressed protein ; expression supported
by MPSS
Length = 295
Score = 28.3 bits (60), Expect = 6.1
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 3/51 (5%)
Frame = -3
Query: 438 KLPTFPEGLIKFSMITWSRLLTGLPTLAKYLDQLKSFG---PHSSGICPFG 295
K+ F E + +FS+ITW L LPT D+L+ +G P S +C G
Sbjct: 129 KVVWFKEYIPRFSLITWMSFLERLPT----RDRLRGWGMNIPSSWVLCSNG 175
>At5g06950.2 68418.m00786 bZIP transcription factor HBP-1b homolog
identical to transcription factor HBP-1b homolog
SP:P43273 from [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 282 IFKYKSSESRLSVSRLISGVWSLRRSLCFVCRAG 181
+F+ KS+ ++ V L+SG+W CF+ G
Sbjct: 159 LFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGG 192
>At5g06950.1 68418.m00785 bZIP transcription factor HBP-1b homolog
identical to transcription factor HBP-1b homolog
SP:P43273 from [Arabidopsis thaliana]
Length = 330
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 282 IFKYKSSESRLSVSRLISGVWSLRRSLCFVCRAG 181
+F+ KS+ ++ V L+SG+W CF+ G
Sbjct: 159 LFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGG 192
>At3g12980.1 68416.m01617 histone acetyltransferase 5 (HAC5) identical
to HAC5 (GI:21105780) [Arabidopsis thaliana]; similar to
CREB-binding protein GB:S39162 from [Homo sapiens]
Length = 1670
Score = 28.3 bits (60), Expect = 6.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +3
Query: 147 HNITATASGLNCRLCKQNIETAE 215
HN T A + C +C+Q +ETA+
Sbjct: 1493 HNPTVPAFAMACAICQQELETAQ 1515
>At3g12250.3 68416.m01530 bZIP family transcription factor contains
Pfam profile:PF00170 bZIP transcription factor
Length = 324
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 282 IFKYKSSESRLSVSRLISGVWSLRRSLCFVCRAG 181
+F+ KS+ ++ V L+SG+W CF+ G
Sbjct: 153 LFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGG 186
>At3g12250.2 68416.m01529 bZIP family transcription factor contains
Pfam profile:PF00170 bZIP transcription factor
Length = 330
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 282 IFKYKSSESRLSVSRLISGVWSLRRSLCFVCRAG 181
+F+ KS+ ++ V L+SG+W CF+ G
Sbjct: 159 LFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGG 192
>At3g12250.1 68416.m01528 bZIP family transcription factor contains
Pfam profile:PF00170 bZIP transcription factor
Length = 330
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -3
Query: 282 IFKYKSSESRLSVSRLISGVWSLRRSLCFVCRAG 181
+F+ KS+ ++ V L+SG+W CF+ G
Sbjct: 159 LFRIKSNAAKNDVFHLLSGMWKTPAERCFLWLGG 192
>At1g08700.1 68414.m00966 presenilin family protein similar to
SP|P52166 Presenilin sel-12 {Caenorhabditis elegans};
contains Pfam profile PF01080: Presenilin
Length = 453
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +1
Query: 541 LLYKNYCRPSEYYASFGNFYICSICPEYVGGASFANIVEHF 663
L Y N+ ++Y F F++ +GGA F +I++HF
Sbjct: 86 LFYYNFTNFLKHYMRFSAFFVLGT----MGGAIFLSIIQHF 122
>At4g29420.1 68417.m04201 F-box family protein contains F-box
Pfam:PF00646 ; similar to SKP1 interacting partner 2
(SKIP2) TIGR_Ath1:At5g67250
Length = 446
Score = 27.9 bits (59), Expect = 8.0
Identities = 18/61 (29%), Positives = 26/61 (42%)
Frame = +2
Query: 338 SWSKYLASVGKPVNNRDHVIIENFIKPSGKVGNFCTCCDMTLKGPRQVLFNHIRQKKTFV 517
+WS+YL S V I + I+ S K+ + D LKG FN K ++
Sbjct: 47 TWSRYLKSRSIVVVTPFKTIFRSLIENSSKIRSISVGVDKALKGMSFDDFNEEDSKDLYL 106
Query: 518 T 520
T
Sbjct: 107 T 107
>At3g61170.1 68416.m06846 pentatricopeptide (PPR) repeat-containing
protein strong similarity to PCMP-H2 [Arabidopsis
thaliana] GI:5050911; contains Pfam profile PF01535: PPR
repeat
Length = 783
Score = 27.9 bits (59), Expect = 8.0
Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = -3
Query: 420 EGLIKFSMITWSRLLTGLPTLAKYLDQLKSF-GPHSSGICPFGLVAFIFKYKSSESRL 250
EG+I+ +I+W+ L+TG Y + LK F GI P +V S+E L
Sbjct: 388 EGMIEKDVISWTALVTGNTHNGSYDEALKLFCNMRVGGITPDKIVTASVLSASAELTL 445
>At1g14900.1 68414.m01781 high-mobility-group protein / HMG-I/Y
protein nearly identical to high-mobility-group protein
HMG-I/Y protein [Arabidopsis thaliana] GI:1429211;
contains Pfam profiles PF00538: linker histone H1 and H5
family, PF02178: AT hook motif
Length = 204
Score = 27.9 bits (59), Expect = 8.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 142 PVITSQPPHPDLTAGSANKT*RPPKRP 222
P S+PP + GS RPPKRP
Sbjct: 139 PKDPSEPPQEKVITGSGRPRGRPPKRP 165
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,344,413
Number of Sequences: 28952
Number of extensions: 373779
Number of successful extensions: 1216
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1755792000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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