Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30128
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    29   0.051
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    24   1.1  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 0.051
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = +1

Query: 289 FPTLPMLRKLELSDNRISN--GLTFLSGCKKLAHLNLSGNKI 408
           F  L  L ++ L DNRI +     F++  K L  LNL GNKI
Sbjct: 112 FADLIQLEQIHLDDNRIESLERRAFMN-LKSLKRLNLKGNKI 152



 Score = 24.6 bits (51), Expect = 0.83
 Identities = 18/61 (29%), Positives = 25/61 (40%)
 Frame = +1

Query: 259 NNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLETLKPLE 438
           N++    L+    +  LR L L  N +S          +L HL+L GN I  L     L 
Sbjct: 476 NSLPTVALEVAGNISSLRYLNLDYNDLSAVPIVTHSLTELRHLSLEGNPITTLSNTSLLG 535

Query: 439 A 441
           A
Sbjct: 536 A 536


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 416 KSLILFPERFKCASFLQPLR 357
           ++ I+FP  F CA  L PL+
Sbjct: 303 RAFIIFPTHFYCAFSLYPLK 322



 Score = 21.4 bits (43), Expect = 7.7
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = -1

Query: 352 SVHLIFYCLTV 320
           ++HL+FYC+ +
Sbjct: 223 TIHLLFYCVLI 233


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,629
Number of Sequences: 336
Number of extensions: 2882
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)