Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30128
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    29   0.90 
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    29   0.90 
SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit C...    28   1.6  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    27   2.1  
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce...    26   4.8  
SPAC926.06c |||leucine-rich repeat protein, unknown|Schizosaccha...    26   6.3  
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar...    25   8.4  

>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 17/50 (34%), Positives = 27/50 (54%)
 Frame = -2

Query: 273 ETHIVKISICKFVYSSVKPTMFVLLQLSRFSSFTCEGSLPLRSKMILFSM 124
           +  I +I   KF+Y   +PT+ +L    + S+ T    LPLR   +LFS+
Sbjct: 226 DASISRILDVKFLYGYREPTLAILYSPEQTSTVT----LPLRKDTVLFSL 271


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = +1

Query: 247  NTDLNNVGLTTLKGFPTLPMLRKLELSDNRISNGLTFLS-GCKKLAHLNLSGNKIKDLET 423
            N  L+N    TL        +R LEL++ ++     +++     L  L+LS N I D+E+
Sbjct: 849  NLYLSNNTFVTLDCKHMFLGVRYLELANVQLKEVPKYIATSMPNLRVLDLSHNYISDIES 908

Query: 424  LKPLE 438
            LKPL+
Sbjct: 909  LKPLQ 913


>SPAC222.16c |csn3|SPAC821.02c|COP9/signalosome complex subunit Csn3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 334

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = -2

Query: 207 VLLQLSRFSSFTCEGSLPLRSKMILFSMFINIPINTLNNF 88
           +LLQ   ++++ C G+  L S  + +   + IP  TL +F
Sbjct: 113 ILLQYCMYAAYHCLGNNDLDSAKVWYFSILYIPTTTLTSF 152


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 269 VSQHSKVFRRCLCSENWNCQTIEYQMD 349
           + QH       L + NW+CQ I+  MD
Sbjct: 458 LQQHKNTIENQLAAANWDCQKIDEFMD 484


>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2100

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)
 Frame = +1

Query: 37  NPSLVI*FLEK*FVGESKVVQSVNWYIYEHGKEDHLGTQREGSFTGERTESG*LQK--YE 210
           NP  +  FL   ++ +S  V  V  +I E+    H+G  +   F  E       +K    
Sbjct: 495 NPQFLFAFLRSLWLKDSSSVNQVVEFIIENDFTSHIGNIQPNRFALEIAALAAARKALSF 554

Query: 211 HSWFNR*IYKFTNTDLNNVGLTTLKGF 291
             W ++ + +F + D  NV L  +  F
Sbjct: 555 QDWLDKKMLEFEDADGLNVFLVEVLDF 581


>SPAC926.06c |||leucine-rich repeat protein,
           unknown|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 621

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 289 FPTLPMLRKLELSDNRISNGLTFLSGCKKLAHLNLSGNKIKDLET 423
           F +L  L  L+LS N ++     L    +L  LNL+ NKI    T
Sbjct: 352 FLSLQSLVSLDLSGNELTEIPYALGELPQLCSLNLASNKITGCRT 396


>SPAC11E3.11c |||guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 227 DEYTNLQILILTMWVSQHSKVFRRCLCSENWNCQTIEYQMD 349
           DE+ NL   +L +  SQ    FRR +  ENW  ++   Q++
Sbjct: 883 DEHQNLHKEMLVVLSSQPKSTFRRAV--ENWKYKSDYLQLN 921


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,350
Number of Sequences: 5004
Number of extensions: 47898
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)