Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30128
         (730 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    27   0.24 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   5.2  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   6.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   6.8  

>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 26.6 bits (56), Expect = 0.24
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = +1

Query: 253 DLNNVGLTTLK-GFPTLPMLRKLELSDNRISNGLT-FLSGCKKLAHLNLSGNKIKDL 417
           DL+   LT++      L +L+ L+L +NRISN          +L  L L GN I +L
Sbjct: 437 DLSGNELTSVPDALRDLALLKTLDLGENRISNFYNGSFRNLDQLTGLRLIGNDIGNL 493


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -2

Query: 510 PTFVVFNASNIIIE*VKI-LQILESFKRLQGF 418
           P   + N S+I+ E  +  LQ+LESFKR   F
Sbjct: 277 PISNLINCSDILEEFERNRLQLLESFKRKVNF 308


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/46 (23%), Positives = 23/46 (50%)
 Frame = +1

Query: 214 SWFNR*IYKFTNTDLNNVGLTTLKGFPTLPMLRKLELSDNRISNGL 351
           SW +  I++   +D   +G+TT+    T+ +  + +L   R +  L
Sbjct: 262 SWVSFWIHREATSDRVGLGITTVLTLSTISLDSRTDLPKVRYATAL 307


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 13/51 (25%), Positives = 22/51 (43%)
 Frame = +2

Query: 191 DNCRSTNIVGLTDEYTNLQILILTMWVSQHSKVFRRCLCSENWNCQTIEYQ 343
           DN +   I G       L ++I+ M V    +    C   +  +C T+EY+
Sbjct: 527 DNMQVRIIAGAIVAVVVLLVIIIIMTVLILRRASDECNKKQPSDCDTLEYR 577


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 176,018
Number of Sequences: 438
Number of extensions: 3268
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)