Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30127
         (717 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo...    31   0.22 
SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|...    27   2.0  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    26   4.7  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    26   6.2  
SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|ch...    26   6.2  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   6.2  

>SPAC343.11c |msc1||multi-copy suppressor of Chk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1588

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -2

Query: 260 HSLSCEVCSNLACMSLLCRISSSNVPSLFVRATLQPVSDITASVAISCVKNSI 102
           H   C++C+      + C I  SN     V A   P SDI      SC+ +S+
Sbjct: 295 HIPKCKLCAQEGSSLVTCCICQSNYHYACVEAPFAPFSDIHYWTCNSCIPSSL 347


>SPAC1A6.05c |||triacylglycerol lipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 483

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/38 (34%), Positives = 22/38 (57%)
 Frame = -2

Query: 203 ISSSNVPSLFVRATLQPVSDITASVAISCVKNSIFFCD 90
           +++ +VP LF RATL     +T  V+  CV ++  + D
Sbjct: 290 VATCSVPFLFKRATLWERDPLTREVSAFCVTDAPLWMD 327


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/13 (69%), Positives = 12/13 (92%)
 Frame = -3

Query: 526 KGITPSRRRRIRG 488
           KG+ PS+RRR+RG
Sbjct: 461 KGVPPSKRRRVRG 473


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/39 (33%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 212 LCRISSSNVPSLFVRATLQPVSDITASV-AISCVKNSIF 99
           LC IS+S++PS+  + +   +SDI  +   I C + S++
Sbjct: 383 LCVISTSSLPSVLQKTSFMYISDIYVNEDDIVCFQGSLW 421


>SPCC757.04 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 684

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 645 NWYYRIPNTRHQILWRTLN 701
           NW+Y++P+T   I WRT++
Sbjct: 455 NWHYKLPDT---ISWRTID 470


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -2

Query: 218 SLLCRISSSNVPSLFVRATLQPVSDITASVAISCVKNSIFFCDARD*LTF 69
           ++ C I+S   P L +  +L+P+S I +S   +  +  + F  +RD ++F
Sbjct: 814 AIKCIITSITHPKLDIAESLEPLSCIPSSSLTNFTQPLVPFSVSRDPISF 863


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,720,045
Number of Sequences: 5004
Number of extensions: 52991
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)