Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30127
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388     29   3.7  
03_04_0161 + 17838466-17838551,17842379-17842445,17842537-178426...    28   6.4  
01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858           28   6.4  
05_06_0221 + 26507795-26508937                                         28   8.5  
01_06_1720 + 39421381-39421444,39422424-39422601,39422812-394229...    28   8.5  

>12_02_1087 - 25949878-25950369,25950386-25950944,25950988-25951388
          Length = 483

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
 Frame = +3

Query: 489 PRIRRRREGVIPF---IRNVTMPVLAANLILTEVP 584
           PR++RRRE  +PF   +RN     L   L L+ VP
Sbjct: 28  PRMQRRREAAVPFRGQVRNTAAASLLLLLSLSHVP 62


>03_04_0161 +
           17838466-17838551,17842379-17842445,17842537-17842662,
           17842756-17842886,17843121-17843220,17843334-17843466,
           17843500-17843544,17843545-17843608,17843692-17844469,
           17844897-17845229,17845427-17845634,17845733-17845809,
           17846168-17846240,17846343-17846413,17846597-17846716,
           17846815-17846879,17846974-17847124
          Length = 875

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = -2

Query: 434 FHLYWANQGEPVYVSPALRYSTG 366
           F ++W+ +GEPV VS ALR ++G
Sbjct: 451 FQMHWS-KGEPVIVSDALRLTSG 472


>01_01_0772 - 5999333-5999881,6001105-6001315,6001791-6001858
          Length = 275

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
 Frame = -2

Query: 383 LRYSTGGPSPV*AALRSLLYQVS-DPRETSVAFSCIHVGFGTHSLSCEVC 237
           LR S    +       ++ Y VS D R+ S  F+  HV   TH +SC+ C
Sbjct: 10  LRISVASSTQDTERYHTIFYHVSRDTRKVSYDFN--HVSRDTHEVSCDTC 57


>05_06_0221 + 26507795-26508937
          Length = 380

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 362 PSPV*AALRSLLYQVSDPRETSVAFSCIHVGFGTH 258
           P P    L  LL   +D  E  +AFSC+  G+ TH
Sbjct: 49  PPPPPPPLPLLLLPEADDNEHGLAFSCVLSGWDTH 83


>01_06_1720 +
           39421381-39421444,39422424-39422601,39422812-39422980,
           39423101-39423170,39423259-39423487,39425130-39425340
          Length = 306

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 279 SCRLRYTLPQLRGLFELGVHVIVVQD 202
           SC L YTLP   GL E+ V+ + V +
Sbjct: 117 SCSLSYTLPSYLGLLEVLVYKVYVDE 142


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,815,696
Number of Sequences: 37544
Number of extensions: 364642
Number of successful extensions: 1021
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 997
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)