Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30127
         (717 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4648| Best HMM Match : No HMM Matches (HMM E-Value=.)               69   5e-12
SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.025
SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)                    29   3.8  
SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)                       29   5.0  
SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  

>SB_4648| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 594

 Score = 68.5 bits (160), Expect = 5e-12
 Identities = 41/131 (31%), Positives = 67/131 (51%)
 Frame = +1

Query: 115 TQLIATLAVMSLTGCSVARTNKDGTFELLILHNNDMHAKFEQTSQLRECVPKPT*MQENA 294
           T ++    + S  G  VA T     F+L +LH ND H++FE+T+            Q+ A
Sbjct: 3   TAILTVAEIASFLGYFVAATG----FKLTVLHTNDFHSRFEETNPYGTVCKA----QDLA 54

Query: 295 TEVSRGSLTW*SRLRKAAQTGEGPPVLYLNAGDTYTGSPWFAQYKWKIAAEFINALQPDA 474
            +   G +   +   K  +  E   +L L+AGD +TG+ W+ +Y+       +N +  DA
Sbjct: 55  KDGCYGGVARRATEIKRIRAKENNVIL-LSAGDVFTGTLWYKEYRGNATWSVMNEMGYDA 113

Query: 475 VSLGNHEFDDG 507
           ++LGNH+FDDG
Sbjct: 114 MTLGNHDFDDG 124


>SB_15720| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1277

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 25/70 (35%), Positives = 34/70 (48%)
 Frame = +2

Query: 380  STLVTRTRARPGSPSTNGK*LQSSSTLFNRMLCHSETTNSTTAGRSNTFHQECDDASFSC 559
            S+  TRT  R  S +T G   +SS+T  +     S TT S T   SNT       +S + 
Sbjct: 1061 SSNTTRTHTRRSSNTTRGHTRRSSNTTRSHARRSSNTTRSHTRRSSNTTRSHTGRSSNTT 1120

Query: 560  KPYTDRSS*T 589
            + +T RSS T
Sbjct: 1121 RSHTRRSSNT 1130



 Score = 33.5 bits (73), Expect = 0.18
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +2

Query: 380 STLVTRTRARPGSPSTNGK*LQSSSTLFNRMLCHSETTNSTTAGRSNTFHQECDDASFSC 559
           S+  TR+  R  S +T G   +SS+T  +     S TT S T   SNT       +S + 
Sbjct: 691 SSNTTRSLTRRSSNTTRGHTRRSSNTTRSHTRRSSNTTRSLTRRSSNTTRSHTRRSSNTT 750

Query: 560 KPYTDRSS*T 589
           + +T RSS T
Sbjct: 751 RRHTRRSSNT 760



 Score = 31.5 bits (68), Expect = 0.71
 Identities = 31/99 (31%), Positives = 46/99 (46%)
 Frame = +2

Query: 344 QLRQAKALQCCISTLVTRTRARPGSPSTNGK*LQSSSTLFNRMLCHSETTNSTTAGRSNT 523
           Q+ Q    Q C  T  TR+  R  S +T     +SS+T        S TT S T   SNT
Sbjct: 670 QVTQLAVTQDCQVT--TRSHTRRSSNTTRSLTRRSSNTTRGHTRRSSNTTRSHTRRSSNT 727

Query: 524 FHQECDDASFSCKPYTDRSS*T*TRAKFT*YNNHNDKQH 640
                  +S + + +T RSS T TR + T  +++  ++H
Sbjct: 728 TRSLTRRSSNTTRSHTRRSSNT-TR-RHTRRSSNTTRRH 764



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 23/70 (32%), Positives = 33/70 (47%)
 Frame = +2

Query: 380 STLVTRTRARPGSPSTNGK*LQSSSTLFNRMLCHSETTNSTTAGRSNTFHQECDDASFSC 559
           S+  TR   R  S +T     +SS+T  +     S TT S T   SNT  +    +S + 
Sbjct: 702 SSNTTRGHTRRSSNTTRSHTRRSSNTTRSLTRRSSNTTRSHTRRSSNTTRRHTRRSSNTT 761

Query: 560 KPYTDRSS*T 589
           + +T RSS T
Sbjct: 762 RRHTRRSSNT 771



 Score = 29.9 bits (64), Expect = 2.2
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +2

Query: 380 STLVTRTRARPGSPSTNGK*LQSSSTLFNRMLCHSETTNSTTAGRSNTFHQECDDASFSC 559
           S+  TR+  R  S +T     +SS+T  +     S TT   T   SNT  +    +S + 
Sbjct: 713 SSNTTRSHTRRSSNTTRSLTRRSSNTTRSHTRRSSNTTRRHTRRSSNTTRRHTRRSSNTT 772

Query: 560 KPYTDRSS*T 589
           + +T RSS T
Sbjct: 773 RSHTRRSSNT 782



 Score = 29.5 bits (63), Expect = 2.8
 Identities = 22/68 (32%), Positives = 31/68 (45%)
 Frame = +2

Query: 380 STLVTRTRARPGSPSTNGK*LQSSSTLFNRMLCHSETTNSTTAGRSNTFHQECDDASFSC 559
           S+  TR+  R  S +T     +SS+T        S TT S T   SNT       +S + 
Sbjct: 735 SSNTTRSHTRRSSNTTRRHTRRSSNTTRRHTRRSSNTTRSHTRRSSNTTRGHTRRSSNTT 794

Query: 560 KPYTDRSS 583
           + +T RSS
Sbjct: 795 RSHTRRSS 802



 Score = 28.7 bits (61), Expect = 5.0
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +2

Query: 386  LVTRTRARPGSPSTNGK*LQSSSTLFNRMLCHSETTNSTTAGRSNTFHQECDDASFSCKP 565
            + TR+  R  S +T     +SS+T        S TT S     SNT       +S + + 
Sbjct: 1052 VTTRSHTRRSSNTTRTHTRRSSNTTRGHTRRSSNTTRSHARRSSNTTRSHTRRSSNTTRS 1111

Query: 566  YTDRSS*T 589
            +T RSS T
Sbjct: 1112 HTGRSSNT 1119



 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/70 (31%), Positives = 31/70 (44%)
 Frame = +2

Query: 380 STLVTRTRARPGSPSTNGK*LQSSSTLFNRMLCHSETTNSTTAGRSNTFHQECDDASFSC 559
           S+  TR+  R  S +T     +SS+T        S TT   T   SNT       +S + 
Sbjct: 724 SSNTTRSLTRRSSNTTRSHTRRSSNTTRRHTRRSSNTTRRHTRRSSNTTRSHTRRSSNTT 783

Query: 560 KPYTDRSS*T 589
           + +T RSS T
Sbjct: 784 RGHTRRSSNT 793


>SB_32938| Best HMM Match : DUF204 (HMM E-Value=0.6)
          Length = 433

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/75 (24%), Positives = 36/75 (48%)
 Frame = -2

Query: 269 FGTHSLSCEVCSNLACMSLLCRISSSNVPSLFVRATLQPVSDITASVAISCVKNSIFFCD 90
           F T  +      + A + L  + ++ +  ++ V++ L  V D T     +C+K+  F C 
Sbjct: 358 FSTQGMPSSKSKDRAYIVLSLKFNTGHEMNVQVQSKLYSVKDNTHVTWGACLKSLDFECK 417

Query: 89  ARD*LTFINVFS*TF 45
            RD  +F+++   TF
Sbjct: 418 MRDGQSFVSIQKTTF 432


>SB_59014| Best HMM Match : CCT (HMM E-Value=6.4)
          Length = 249

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 27/106 (25%), Positives = 42/106 (39%), Gaps = 8/106 (7%)
 Frame = +2

Query: 281 CRKMLRRFREGRLPGKADYAKQLRQAKALQCCISTLVTRTRARPGSPSTNGK*L------ 442
           C  +L    EGR P KAD   +L +A+     +S  VT +  R  +P T+   L      
Sbjct: 93  CNTILGAVCEGRRPSKADVKPKLGKAELKPMSVSRNVTAS-TRTKNPKTSEDNLVVALNT 151

Query: 443 --QSSSTLFNRMLCHSETTNSTTAGRSNTFHQECDDASFSCKPYTD 574
              + ST  NR + H          +      +C+   F+   YT+
Sbjct: 152 TTPTKSTRMNRRIRHLVRRCCKLGAKGGEMGFDCNWDRFTALQYTN 197


>SB_37850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 509

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +3

Query: 402 GLALVRPVQMENSCRVHQRSSTGCCVTRKP 491
           G  L  PV M + C    +S +GCCV +KP
Sbjct: 453 GECLKNPVYMSSQC---WKSCSGCCVDKKP 479


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,911,205
Number of Sequences: 59808
Number of extensions: 444143
Number of successful extensions: 1133
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1128
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)