Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30127
         (717 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U64848-2|AAM29669.2|  376|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical ...    29   4.4  
Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical pr...    28   5.8  
Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical pr...    28   5.8  
U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class c...    28   5.8  
U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class c...    28   5.8  

>Z92780-1|CAB07174.1| 1186|Caenorhabditis elegans Hypothetical
           protein C45G3.1 protein.
          Length = 1186

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +3

Query: 504 RREGVIPFIRNVT--MPVLAANLILTEVPELKQEPNLR 611
           R   V PF  NVT  +P    N ILTE P L Q P+ R
Sbjct: 595 RNRSVSPFSNNVTFTVPRTPRNNILTERPSLSQIPSSR 632


>U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical
           protein R144.12 protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 12/41 (29%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 403 GSPWFAQYKWKIAAEFINALQPDA-VSLGNHEFDDGGKE*Y 522
           G+ W+A  +W +   ++  +  DA  +  + E  +GGKE Y
Sbjct: 234 GAAWYANKQWHLLYRYLTDIHADAEAARASFEHAEGGKEYY 274


>U64848-2|AAM29669.2|  376|Caenorhabditis elegans Hypothetical
           protein C50E3.6 protein.
          Length = 376

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 20/61 (32%), Positives = 30/61 (49%)
 Frame = -2

Query: 455 LMNSAAIFHLYWANQGEPVYVSPALRYSTGGPSPV*AALRSLLYQVSDPRETSVAFSCIH 276
           ++ S  IF +  +N   P+     LR+S G PSP   A  S++ Q    R  S + +C H
Sbjct: 22  VVESNVIFTVEESNVTTPIRHLHRLRHSKG-PSPYLTASSSVINQRESNRLESFSLNCPH 80

Query: 275 V 273
           V
Sbjct: 81  V 81


>AF025463-1|AAB71008.3|  871|Caenorhabditis elegans Hypothetical
           protein K10B4.3 protein.
          Length = 871

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -2

Query: 209 CRISSSNVPSLFVRATLQPVSDITASVAISCVKN 108
           C+I+S  + SLF+    +PV  +T  VA+ C+ +
Sbjct: 109 CKIASDLLSSLFLHYGNKPVMTLTIPVALKCLNS 142


>Z81522-5|CAD98731.1|  663|Caenorhabditis elegans Hypothetical
           protein F32B4.4b protein.
          Length = 663

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 482 SETTNSTTAGRSNTFHQECDDASFSCKPYTDRSS 583
           +  TN+T AGRS       D +S+S   Y  RSS
Sbjct: 513 TNNTNATNAGRSYGIQSVPDASSYSTNNYQQRSS 546


>Z81522-4|CAB04233.1|  771|Caenorhabditis elegans Hypothetical
           protein F32B4.4a protein.
          Length = 771

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 482 SETTNSTTAGRSNTFHQECDDASFSCKPYTDRSS 583
           +  TN+T AGRS       D +S+S   Y  RSS
Sbjct: 621 TNNTNATNAGRSYGIQSVPDASSYSTNNYQQRSS 654


>U58751-3|AAN84880.1|  667|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform c protein.
          Length = 667

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +2

Query: 485 ETTNSTTAGR---SNTFHQECDDASFSCKPYT 571
           +TT+S+   R   S TFH  CDD+ +S +P T
Sbjct: 63  DTTSSSLNKRMCKSATFHDFCDDSEYSRRPVT 94


>U58751-2|AAL00852.1|  700|Caenorhabditis elegans Pctaire class cell
           cycle kinaseprotein 1, isoform b protein.
          Length = 700

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +2

Query: 485 ETTNSTTAGR---SNTFHQECDDASFSCKPYT 571
           +TT+S+   R   S TFH  CDD+ +S +P T
Sbjct: 96  DTTSSSLNKRMCKSATFHDFCDDSEYSRRPVT 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,347,483
Number of Sequences: 27780
Number of extensions: 315509
Number of successful extensions: 887
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1676746902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)