Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30127
         (717 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    25   0.71 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.94 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   5.0  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   8.8  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              21   8.8  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    21   8.8  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   8.8  

>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 432 ENSCRVHQRSSTGCCVTRKPRIRRRREGVIP--FIRNVTMPVLAAN 563
           ENS R ++ +S      R+ R R R   +IP  +I  + +PV   N
Sbjct: 286 ENSYRKYRETSKERSRDRRERGRSREHRIIPSHYIEQIPVPVYYGN 331


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.6 bits (51), Expect = 0.94
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = -2

Query: 242 VCSNLACMSLLCRISSSNVPSLFVRATLQPVSDITAS 132
           VC+  +C S+L  I   +V         +PV+D+ AS
Sbjct: 371 VCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAAS 407


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = -2

Query: 242 VCSNLACMSLLCRISSSNVPSLFVRATLQPVSDITAS 132
           VC+  +C S+L  I   +V         +PV+D+  S
Sbjct: 318 VCTVNSCTSMLSGIVIFSVVGFMAHEQQKPVADVAVS 354


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +1

Query: 217  DMHAKFEQTSQLRECVPKPT*MQENATEVSRGS 315
            DM+ K  Q+ +L+E V   + +++   ++ RG+
Sbjct: 1286 DMNGKLRQSPRLKELVGATSIIKDCVEDMKRGN 1318


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 7/21 (33%), Positives = 8/21 (38%)
 Frame = -3

Query: 220 CHCCAGSAAQMYRPCSYAPRC 158
           CHCC   A      C    +C
Sbjct: 747 CHCCDFDACDCEMTCPAGCKC 767


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 256 PSVARSVRTWRACHCCAGS 200
           PSVA +    + C+CC  S
Sbjct: 79  PSVASTTGFSKECYCCRES 97


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = -3

Query: 256 PSVARSVRTWRACHCCAGS 200
           PSVA +    + C+CC  S
Sbjct: 79  PSVASTTGFSKECYCCRES 97


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 6/14 (42%), Positives = 8/14 (57%)
 Frame = -3

Query: 220 CHCCAGSAAQMYRP 179
           C CC G   + Y+P
Sbjct: 406 CACCPGRVRRRYQP 419


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,543
Number of Sequences: 438
Number of extensions: 3839
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)