Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30127
         (717 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g20450.1 68417.m02984 leucine-rich repeat protein kinase, put...    29   4.1  
At1g51820.1 68414.m05841 leucine-rich repeat protein kinase, put...    28   7.1  
At1g77270.1 68414.m08999 expressed protein                             27   9.4  
At1g62310.1 68414.m07031 transcription factor jumonji (jmjC) dom...    27   9.4  

>At4g20450.1 68417.m02984 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
           contains leucine rich repeat (LRR) domains,
           Pfam:PF00560; contains protein kinase domain,
           Pfam:PF00069
          Length = 898

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 283 QENATEVSRGSLTW*SRLRKAAQTGEGPPVLYL 381
           Q  + E SR  L+W +RLR AA+T +G   L++
Sbjct: 674 QHLSGENSRSPLSWENRLRIAAETAQGLEYLHI 706


>At1g51820.1 68414.m05841 leucine-rich repeat protein kinase,
           putative similar to light repressible receptor protein
           kinase GI:1321686 from (Arabidopsis thaliana); contains
           leucine rich repeat (LRR) domains, Pfam:PF00560;
           contains protein kinase domain, Pfam:PF00069
          Length = 885

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 13/54 (24%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
 Frame = +3

Query: 450 HQRSSTGCCVTRKPRIRRRREGVIPFIRNV-TMPVLAANLILTEVPELKQEPNL 608
           H   +TG CV +K    +++  ++P + ++ ++ VL   L+L  +   K+ P +
Sbjct: 485 HILCTTGSCVKKKEDGHKKKSVIVPVVASIASIAVLIGALVLFLILRKKRSPKV 538


>At1g77270.1 68414.m08999 expressed protein
          Length = 682

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +1

Query: 466 PDAVSLGNHEFDDGGK 513
           PD +++ NH F DGGK
Sbjct: 530 PDIIAVSNHPFPDGGK 545


>At1g62310.1 68414.m07031 transcription factor jumonji (jmjC)
           domain-containing protein similar to nuclear protein
           5qNCA [Homo sapiens] GI:13161188; contains Pfam profile
           PF02373: jmjC domain
          Length = 883

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 358 EGPPVLYLNAGDTYTGSPWFAQYKWKIAAEFINALQPDAVS 480
           +G PV+  NA D   G  W     W+   E +N+     +S
Sbjct: 520 KGEPVIVRNALDNTPGLSWEPMVMWRALCENVNSTSSSEMS 560


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,280,269
Number of Sequences: 28952
Number of extensions: 288670
Number of successful extensions: 868
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1555552968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)