Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30126
(751 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 29 0.54
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 29 0.71
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 28 1.2
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 28 1.6
SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|c... 27 2.9
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 27 3.8
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 26 5.0
SPBC2A9.11c ||SPBC2D10.01c|nuclear export factor|Schizosaccharom... 25 8.7
SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|... 25 8.7
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr... 25 8.7
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 29.5 bits (63), Expect = 0.54
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -3
Query: 95 PTIECSTRDVIVCWNARTRHDHASMRI 15
P+ C T V++CW A + H ++R+
Sbjct: 838 PSDNCETNRVVICWGATLQAPHRAVRL 864
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 29.1 bits (62), Expect = 0.71
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = -1
Query: 367 PGTLNNIVRYCSNCLVSSQSCEYNSSSDQFLYAFQE 260
P TL N+V Y S C + + C+ S+ L AFQ+
Sbjct: 194 PATLLNVVPYVSICFFTFEFCKQKFFSNADLTAFQK 229
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 28.3 bits (60), Expect = 1.2
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = -3
Query: 659 NFVLISVIKCIVPEKCENSAQLMPYYSKS 573
NFVL+S+I CIV + +N LMP+ S
Sbjct: 309 NFVLLSLIDCIVVTR-QNMNNLMPFEDAS 336
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/62 (25%), Positives = 25/62 (40%)
Frame = +1
Query: 217 DNNALFNLTEDIQGFLGRHIRIGPMMNCIRNFVTIPSNCCSIVLCYLMFPATSLSWDQKA 396
D L N I G + H G ++ + +CC++V Y M P +D K
Sbjct: 121 DRKDLENFNGSIAGIIDHHKDEGGSLHADPRIIEECGSCCTLVCRYFM-PVIRSLYDSKV 179
Query: 397 TE 402
+E
Sbjct: 180 SE 181
>SPBC1773.12 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 594
Score = 27.1 bits (57), Expect = 2.9
Identities = 8/14 (57%), Positives = 12/14 (85%)
Frame = -1
Query: 337 CSNCLVSSQSCEYN 296
C NC+V S++C+YN
Sbjct: 28 CQNCVVYSETCKYN 41
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 26.6 bits (56), Expect = 3.8
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Frame = +1
Query: 163 LNAFSLWRAEKALTTFAGDNNALFNLTEDIQGFLGRHIRIGPMMN-CIRNFVTIPSNCCS 339
L+A+S R E+ L+ L + D++ L + + ++N C+ + T+ S CS
Sbjct: 459 LDAYSYERDEEVLSCVWTTEVPLKDAF-DLKSVLRKTDNVESVLNACVEKY-TLSSITCS 516
Query: 340 IVLCYLMFP 366
+ LC L FP
Sbjct: 517 LRLCLLEFP 525
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = -2
Query: 330 IAWYRHKVANTIHHRTNSYMPSKKTLYILGQIEQCVIISCKS 205
+ W R + +S +PS + YIL +E+C +++ K+
Sbjct: 411 LPWLRVTCNAIVTKCLDSQLPSVRLSYILDTLEECPLLNIKT 452
>SPBC2A9.11c ||SPBC2D10.01c|nuclear export
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 8.7
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = +3
Query: 276 KNWSDDELYSQLCDDTKQLLQYRTM 350
K W +++ Y+ +CD K L Q T+
Sbjct: 170 KKWKEEKNYAYICDQFKSLRQDLTV 194
>SPBC1773.16c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 8.7
Identities = 12/32 (37%), Positives = 14/32 (43%), Gaps = 1/32 (3%)
Frame = -1
Query: 337 CSNCLVSSQSCEY-NSSSDQFLYAFQENPVYP 245
C NC+V + C Y A QEN YP
Sbjct: 24 CQNCMVYGEECRYVKRVKHDNRAAVQENERYP 55
>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
glycotransferase subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 437
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 7 LAAILILAWSCRVRAFQQTITSRVLHSIVGDAT 105
L L L WS V+A +QT+ + H I G +T
Sbjct: 5 LCIALALTWSLLVQAARQTVLAVADHDIGGYST 37
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,150,186
Number of Sequences: 5004
Number of extensions: 69234
Number of successful extensions: 199
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 194
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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