Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30126
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0338 + 2665412-2665564,2665647-2665766,2666344-2666397,266...    30   1.7  
01_06_1570 + 38312319-38314259                                         30   2.3  
03_05_0729 + 27203481-27203488,27203529-27203611,27204075-272041...    29   3.0  
08_01_0757 - 7164380-7164490,7164585-7165041,7165057-7165275,716...    29   3.9  
08_01_0758 - 7193287-7193871,7193965-7194421,7194437-7194655,719...    29   5.2  

>05_01_0338 +
           2665412-2665564,2665647-2665766,2666344-2666397,
           2666583-2666660,2667608-2667652,2668327-2668434,
           2668629-2668706,2669352-2669457,2669622-2669680,
           2670465-2670564,2670932-2671011,2671132-2671188,
           2671321-2671424,2671799-2671886,2671971-2672056,
           2672140-2672185,2672246-2672317,2672541-2672601,
           2672692-2672936
          Length = 579

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = +1

Query: 130 DCTRELGVR-TCLNAFSLWRAEKALTTFAGDNNALFNLTEDIQGFLGRHI-RIGPMM-NC 300
           +C   LGVR TCL    L +A  +L+TF G+   + +    + G + ++I  +  ++ NC
Sbjct: 441 ECEETLGVRSTCLQLKLLAKARYSLSTFEGEQIVIVSQVIKLNGTVVKNIHHLAHLVDNC 500

Query: 301 IRNFVT 318
              F+T
Sbjct: 501 KDKFLT 506


>01_06_1570 + 38312319-38314259
          Length = 646

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 21/71 (29%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
 Frame = -3

Query: 257 PCISSVKLNNALLSPAKVVRAFSARHRLNAFKHVRTPSSRVQSKTRCTGVF---VASPTI 87
           PC+  V    A  +    V       RL A  H R PS+   +   C G F   +ASP +
Sbjct: 53  PCMPPVANQTACCTTLLSVLGVGLAARLRATGHFRLPSA--NASAACLGAFSDELASPPL 110

Query: 86  ECSTRDVIVCW 54
                 V  CW
Sbjct: 111 SLQDTLVPACW 121


>03_05_0729 +
           27203481-27203488,27203529-27203611,27204075-27204190,
           27204298-27204330,27205196-27205402,27205532-27205600,
           27206096-27206192,27206289-27206407
          Length = 243

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
 Frame = -2

Query: 552 FNAGKTNGSTADMRSPATIEKVLFCRMFFAFFSYRGLILRR--YLKSHRCSAFRCL 391
           F+      + AD      ++K+ FC++   F+SYR  I  R   L   +   FRCL
Sbjct: 44  FSVAAAEVTVADKEGKDALDKLCFCKVATIFYSYREQIEARGLPLTPDQKYCFRCL 99


>08_01_0757 -
           7164380-7164490,7164585-7165041,7165057-7165275,
           7165501-7165757
          Length = 347

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
 Frame = +1

Query: 100 ATNTPVQRVLDCTRELGVRTCLNAFSL-WRAEKALTTFAGDNNALFNLTEDIQGFLGRHI 276
           AT+T      D ++E   +  +  F + W A KA   F      L  +   I        
Sbjct: 12  ATSTTKIPTTDYSKETHAKCSMLGFDIKWDANKADIVFLTKTVVLETVPASIASLSAFSP 71

Query: 277 RIGPMMNCIRNFVTIPSNCCSIVLCYLMFPATSLSWDQ 390
           R   M+  I+++  +P++CC + +     P T   W Q
Sbjct: 72  R---MIADIKHYTLMPTSCCKVHILPPWPPPTEAKWFQ 106


>08_01_0758 -
           7193287-7193871,7193965-7194421,7194437-7194655,
           7194881-7195419
          Length = 599

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 23/98 (23%), Positives = 39/98 (39%), Gaps = 1/98 (1%)
 Frame = +1

Query: 100 ATNTPVQRVLDCTRELGVRTCLNAFSL-WRAEKALTTFAGDNNALFNLTEDIQGFLGRHI 276
           AT+T      D ++E   +  +  F + W A KA   F      L  +   I        
Sbjct: 106 ATSTTKIPTTDYSKETHAKCSMLGFDVKWDANKADIAFLTKTVVLETVPASIASLSAFSP 165

Query: 277 RIGPMMNCIRNFVTIPSNCCSIVLCYLMFPATSLSWDQ 390
           R   M+  I+++  +P++CC + +     P T   W Q
Sbjct: 166 R---MIADIKHYTLMPTSCCKVHILPPWPPPTEAKWFQ 200


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,402,477
Number of Sequences: 37544
Number of extensions: 445060
Number of successful extensions: 1113
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1113
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)