Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30126
         (751 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39)                      30   2.3  
SB_44522| Best HMM Match : Ank (HMM E-Value=0)                         29   4.0  
SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)                    29   4.0  
SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.3  
SB_22367| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)             28   7.0  
SB_341| Best HMM Match : Shugoshin_C (HMM E-Value=0.073)               28   7.0  
SB_58129| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_10973| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  
SB_53614| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.3  

>SB_39563| Best HMM Match : Ctr (HMM E-Value=0.39)
          Length = 258

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/42 (40%), Positives = 25/42 (59%)
 Frame = +2

Query: 452 YEKNAKNILQNSTFSIVAGLLMSAVLPFVLPALKMMTVAVGI 577
           Y   AK+ L  +T  IV     SA+L F++PA+ M TVA+ +
Sbjct: 6   YTVMAKHTLDTTTMKIV-----SALLAFLIPAILMFTVAIKV 42


>SB_44522| Best HMM Match : Ank (HMM E-Value=0)
          Length = 275

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 358 LNNIVRYCSNCLVSSQSCEYNSSSDQ 281
           L  +VRYCS+C VS  S  + ++S Q
Sbjct: 105 LYRVVRYCSDCAVSGSSVLFGNNSVQ 130


>SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)
          Length = 865

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 606 VFTLLRNNAFNDRYEHKVL-YVNEGYQEREACQ 701
           VF++L N+AFND+ EH ++ Y+   YQE    Q
Sbjct: 642 VFSVL-NSAFNDQQEHALVDYLQASYQETVTIQ 673


>SB_37793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 456 KKMQKTFYKI-VPFLLLPGFSCRRYCHLSCQH 548
           K  Q  FYK+  P+++L  F+CR  C   CQH
Sbjct: 223 KISQAVFYKMRPPYMMLASFACRDTC--LCQH 252


>SB_22367| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 111 TCATRFRLYSRTRRTNMLKRI 173
           TC T F +YS TR+ N++K +
Sbjct: 160 TCITIFNIYSNTRKLNVVKNL 180


>SB_14518| Best HMM Match : MIB_HERC2 (HMM E-Value=2.4e-38)
          Length = 742

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 297 IHHRTNSYMPSKKTLYILGQIEQCVIISCKSRESLFCP 184
           + H T S +   + +  +G+IE+C++ S K  + LF P
Sbjct: 602 LRHHTLSQLRQLQDMQDVGKIEECMVCSEKKSQLLFKP 639


>SB_341| Best HMM Match : Shugoshin_C (HMM E-Value=0.073)
          Length = 222

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 318 DTKQLLQYRTMLFN-VPGYKFELGSKGNGTLNIDVISNNDGE 440
           D + +L  ++ML   +PG+KF LG  G G  +   I  +DG+
Sbjct: 140 DVEDMLSVQSMLEQKIPGFKFNLGFSGKG-YHRGNIDEDDGD 180


>SB_58129| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 82

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 7/54 (12%)
 Frame = +3

Query: 300 YSQLCDDTKQLLQYR----TMLFN--VPGYKFELGSKGNGTLNI-DVISNNDGE 440
           YS L +  + +L YR    T  F    PG++ E G  G GT+N  DV    DG+
Sbjct: 13  YSSLKNVNRAILYYRLNSKTQRFTGTYPGFRNECGCHGAGTVNASDVCDKLDGQ 66


>SB_10973| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 197

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/73 (28%), Positives = 34/73 (46%)
 Frame = -1

Query: 472 VFCIFFIPRPDSPSLFEITSMFSVPLPFDPNSNL*PGTLNNIVRYCSNCLVSSQSCEYNS 293
           + C+  I R D+          S  +PF    N     +NNI+R   N L+SS+ C +  
Sbjct: 75  ILCVANISRIDALRPNNNNHKNSRRIPFVTTYNPTLPNINNIIRRNYNLLLSSKRC-HKV 133

Query: 292 SSDQFLYAFQENP 254
            ++  L AF+ +P
Sbjct: 134 FTEPPLVAFRRSP 146


>SB_53614| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 192

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 21/67 (31%), Positives = 32/67 (47%)
 Frame = -1

Query: 454 IPRPDSPSLFEITSMFSVPLPFDPNSNL*PGTLNNIVRYCSNCLVSSQSCEYNSSSDQFL 275
           I R D+P         S  +PF    N     +NNI+R   N L+SS+ C +   ++  L
Sbjct: 97  ISRIDAPRPNNNNHKNSRRIPFVTTYNPTLPNINNIIRRNYNLLLSSKRC-HKVFTEPPL 155

Query: 274 YAFQENP 254
            AF+ +P
Sbjct: 156 VAFRRSP 162


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,421,997
Number of Sequences: 59808
Number of extensions: 556189
Number of successful extensions: 1594
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1592
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2034222073
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)