Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30126
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   3.1  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    23   4.0  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   4.0  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    22   5.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    22   7.1  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.3  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +3

Query: 612 TLLRNNAFNDRYEHKVLYVNEGYQER 689
           T+  NN +N+ Y +K LY N  Y E+
Sbjct: 311 TIHNNNNYNN-YNNKKLYYNINYIEQ 335


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 471 TFYKIVPFLLLPGFSCRRYCH 533
           +FY  VP +++ G  CR YC+
Sbjct: 200 SFY--VPCIVMLGIYCRLYCY 218


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = -2

Query: 321 YRHKVANTIHHRTNSYMPSKKTLYILGQIEQ 229
           Y +   N  ++  N+Y   KK  Y +  IEQ
Sbjct: 96  YNNNNYNNYNYNNNNYNNYKKLYYNINYIEQ 126


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +3

Query: 345 TMLFNVPGYKFELGSKGNGTLNIDVISNNDGESG 446
           TML ++ G    LG   NG   ID++S  +G  G
Sbjct: 261 TMLASMGGGLVGLGFSLNGPDRIDILSQINGILG 294


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 523 GTAICLASIKNDDRCCRDF 579
           G+  C+ S+K+  +C  DF
Sbjct: 155 GSVSCVPSVKHVAKCATDF 173


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 611 ENSAQLMPYYSKSRQQRSSFLMLARQ 534
           +N+ +  PYY  SR+Q S   +++ +
Sbjct: 329 DNTPRDFPYYMYSREQYSQSHLISNE 354


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,282
Number of Sequences: 438
Number of extensions: 5608
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)