Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30126
         (751 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g09760.1 68418.m01130 pectinesterase family protein contains ...    29   4.4  
At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00...    28   5.8  
At1g29950.2 68414.m03661 expressed protein                             28   5.8  
At1g29950.1 68414.m03660 expressed protein                             28   5.8  
At1g15210.1 68414.m01818 ABC transporter family protein Similar ...    28   5.8  
At2g06095.1 68415.m00669 expressed protein                             28   7.6  

>At5g09760.1 68418.m01130 pectinesterase family protein contains
           Pfam profile: PF01095 pectinesterase
          Length = 551

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +1

Query: 277 RIGPMMNCIRNFVTIPSNCCSIVLCYLMFPATSLSWDQKATER 405
           ++G  M+ +   + + SN  S+++ Y  F     SW   ATER
Sbjct: 168 QVGETMSFLDGLIHVTSNALSMMVSYDNFGDNVASWTYPATER 210


>At3g62230.1 68416.m06991 F-box family protein contains Pfam:PF00646
           F-box domain
          Length = 461

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = +3

Query: 420 ISNNDG-ESGRGMKKMQKTFYKIVPFLLLPGFSCR 521
           ++NND  +   G+ K+ ++FYKI   + L  F CR
Sbjct: 132 VTNNDAAQLEPGLIKLPESFYKITSLVTLKLFGCR 166


>At1g29950.2 68414.m03661 expressed protein
          Length = 251

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 423 SNNDGESGRGMKKMQKTFYKIVP 491
           SNNDG+  + MKKM     +IVP
Sbjct: 192 SNNDGKGRKKMKKMMGVLRRIVP 214


>At1g29950.1 68414.m03660 expressed protein
          Length = 251

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +3

Query: 423 SNNDGESGRGMKKMQKTFYKIVP 491
           SNNDG+  + MKKM     +IVP
Sbjct: 192 SNNDGKGRKKMKKMMGVLRRIVP 214


>At1g15210.1 68414.m01818 ABC transporter family protein Similar to
           gb|Z70524 GI:1514643 PDR5-like ABC transporter from
           Spirodela polyrrhiza and is a member of the PF|00005 ABC
           transporter family. ESTs gb|N97039 and gb|T43169 come
           from this gene
          Length = 1442

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 27/104 (25%), Positives = 47/104 (45%)
 Frame = -3

Query: 344 TILQQLLGIVTKLRIQFIIGPILICLPRKPCISSVKLNNALLSPAKVVRAFSARHRLNAF 165
           TIL+ + GIV   R+  ++GP            + KL+ +L    +V   ++  +RLN F
Sbjct: 183 TILKDVSGIVKPSRMTLLLGPPSSGKTTLLLALAGKLDKSLDVSGEV--TYNG-YRLNEF 239

Query: 164 KHVRTPSSRVQSKTRCTGVFVASPTIECSTRDVIVCWNARTRHD 33
             ++T S+ +       G+     T++ S R    C    TR+D
Sbjct: 240 VPIKT-SAYISQNDLHVGIMTVKETLDFSAR----CQGVGTRYD 278


>At2g06095.1 68415.m00669 expressed protein
          Length = 116

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 19/49 (38%), Positives = 26/49 (53%)
 Frame = +1

Query: 544 SIKNDDRCCRDFE*YGINWALFSHFSGTMHLMTDMSTKFYMLTKATKNE 690
           SI NDDR   DFE      +LFS FSG ++  T M  + +   KA + +
Sbjct: 39  SISNDDRA--DFESLCCFSSLFSVFSGILYSGTIMEMRRHFGAKAKEKK 85


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,421,084
Number of Sequences: 28952
Number of extensions: 359671
Number of successful extensions: 976
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 944
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 976
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)