Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30125
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    24   1.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    24   1.5  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   4.6  
AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical pro...    22   4.6  

>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 659  LGEKFQLRELISCGPSNLNNPTWWVWRKKTI 751
            L E FQ R +   G ++ NNP+   +RKK++
Sbjct: 1390 LDEAFQ-RRVTQIGSTSSNNPSISAFRKKSL 1419


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 659  LGEKFQLRELISCGPSNLNNPTWWVWRKKTI 751
            L E FQ R +   G ++ NNP+   +RKK++
Sbjct: 1390 LDEAFQ-RRVTQIGSTSSNNPSISAFRKKSL 1419


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 355 PWYQPSFTEVRKVLQLFRLRQINNG 429
           P  QP+    R   +  R++Q+NNG
Sbjct: 80  PQQQPASVARRNARERNRVKQVNNG 104


>AM712905-1|CAN84644.1|  102|Tribolium castaneum hypothetical
           protein protein.
          Length = 102

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -1

Query: 556 LSLANPRLYTNSRTLF 509
           LS A PRL  N+RT+F
Sbjct: 87  LSSAFPRLKRNARTIF 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,769
Number of Sequences: 336
Number of extensions: 3814
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)