Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30125
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...    76   6e-15
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...    75   8e-15
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...    69   5e-13
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    27   2.9  
SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c...    27   3.8  
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c...    25   8.7  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 75.8 bits (178), Expect = 6e-15
 Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 1/111 (0%)
 Frame = +1

Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
           + RK++QL RL QINNGVFV+ NKAT  ML + EPY+ +G PN + +V           V
Sbjct: 106 KARKIMQLLRLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLK-TVRELLYKRGFGKV 164

Query: 559 DNVYQSLS-NSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFK 708
           +    +LS N+I+E  L K+ I+ +ED       VG        NF+WPF+
Sbjct: 165 NKQRIALSDNAIIEAALGKYSILSIEDLIHEIYTVGPNFK-QAANFIWPFQ 214



 Score = 64.1 bits (149), Expect = 2e-11
 Identities = 30/51 (58%), Positives = 35/51 (68%)
 Frame = +2

Query: 254 RIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
           R  ER++I L R+AR  GNYYVP E KL FVIRIRGIN + PK+ K    L
Sbjct: 64  RKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114



 Score = 29.9 bits (64), Expect = 0.40
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +3

Query: 93  SKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEY 254
           SK+    PES+LK            +    +++++  KK+  I KRAE Y  EY
Sbjct: 10  SKEQIFAPESLLKKKKTQEQSREQRVAAAAEKKAAQQKKRELIAKRAESYDAEY 63


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 75.4 bits (177), Expect = 8e-15
 Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 1/111 (0%)
 Frame = +1

Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
           + RK++QL RL QINNG+FV+ NKA   ML + EPY+ +G PN   +V           V
Sbjct: 105 KARKIMQLLRLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPN-HKTVRELIYKRGFGKV 163

Query: 559 DNVYQSLS-NSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFK 708
           +     LS N+I+E  L K+ I+ VED       VG        NFLWPFK
Sbjct: 164 NKQRIPLSDNAIIEAALGKYSILSVEDLIHEIYTVGPNFK-QAANFLWPFK 213



 Score = 63.3 bits (147), Expect = 4e-11
 Identities = 29/51 (56%), Positives = 36/51 (70%)
 Frame = +2

Query: 254 RIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
           R  ER++I LAR+AR  GNY+VP E KL FV+RIRGIN + PK+ K    L
Sbjct: 63  RAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113



 Score = 29.9 bits (64), Expect = 0.40
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 114 PESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEY 254
           PES+LK            +    +++S+  KK+  I KRAE Y  EY
Sbjct: 16  PESLLKKTKAQKQSREQIVAAAAEKKSARQKKRELIAKRAEAYEAEY 62


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score = 69.3 bits (162), Expect = 5e-13
 Identities = 44/110 (40%), Positives = 60/110 (54%), Gaps = 1/110 (0%)
 Frame = +1

Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
           ++RKVL+L RL +INN VFVR NKA   ML I EPY+ +G PN   SV           +
Sbjct: 104 KIRKVLRLLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLH-SVRELIYKRGFGKI 162

Query: 559 DNVYQSLS-NSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPF 705
           +    +LS N+++E+ L K+ +I +ED       VG         FLWPF
Sbjct: 163 NGQRIALSDNALIEEALGKYDVISIEDIIHEIYNVGSHFKEV-TKFLWPF 211



 Score = 53.2 bits (122), Expect = 4e-08
 Identities = 25/51 (49%), Positives = 33/51 (64%)
 Frame = +2

Query: 254 RIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
           R +ER+ IRL R A+N+G+ +VP E KL FVIRI G+  + PK  K    L
Sbjct: 62  RQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLRLL 112


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 17/53 (32%), Positives = 22/53 (41%)
 Frame = +1

Query: 529 YTNVDSPS*VDNVYQSLSNSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRV 687
           YTN D  S     + S+SN  V+    KH +   E+     SL     P  RV
Sbjct: 94  YTNFDDESPSSPTHPSVSNITVDGDSKKHSLQLQEEEKSSESLDSHTHPPKRV 146


>SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 871

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +1

Query: 538 VDSPS*VDNVYQSLSNSIVEKRLHKHHIICVEDSSMRSSL----VGRKVPVTRVNFL 696
           V   S + N Y+S  NS++ K + KH+ +  +   + S+L      +K P  R+ FL
Sbjct: 225 VKKRSDLGNKYESTLNSLINKSVKKHNKLVKKHKPLPSTLDYTAYVKKRPTHRLKFL 281


>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 15/58 (25%), Positives = 25/58 (43%)
 Frame = +1

Query: 76  SKGRKTVRSCLLYQSQCSSIVRGERLFALGDYRLR*RGVLLPSRRRGKSSRGLNSTSR 249
           S+G+   ++C L+Q+ C    R  R   +   +    G+ LP +   K   G  S  R
Sbjct: 18  SRGQPRCQTCTLFQADCHYSNRARRKRLVQRSKETFGGITLPVKNIEKPEDGEESVQR 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,048,514
Number of Sequences: 5004
Number of extensions: 64103
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)