Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30125
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0835 + 8147177-8147359,8147871-8147968,8148045-8148102,814...    90   2e-18
04_04_1075 + 30634141-30634320,30634917-30635014,30635113-306351...    82   4e-16
08_02_1442 + 27120604-27120890,27121029-27121166,27121280-271213...    60   1e-09
12_01_0642 + 5414964-5415410,5415535-5416677                           28   6.9  
12_02_0025 + 12408933-12409464,12409590-12409686,12410121-124101...    28   9.1  
08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,366...    28   9.1  

>08_01_0835 +
           8147177-8147359,8147871-8147968,8148045-8148102,
           8148192-8148271,8148770-8148872,8148966-8149181
          Length = 245

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 51/113 (45%), Positives = 68/113 (60%), Gaps = 1/113 (0%)
 Frame = +1

Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
           + RK+LQL RLRQI NGVF+++NKAT+NML   EPY+A+GYPN + SV           +
Sbjct: 101 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLK-SVRELIYKRGYGKL 159

Query: 559 DNVYQSL-SNSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFKFE 714
           +     L +N ++E+ L KH IIC+ED       VG        NFLWPFK +
Sbjct: 160 NKQRIPLQNNKVIEEGLGKHDIICIEDLVHEIMTVGPHFKEAN-NFLWPFKLK 211



 Score = 53.6 bits (123), Expect = 2e-07
 Identities = 24/49 (48%), Positives = 35/49 (71%)
 Frame = +2

Query: 260 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
           +E++ ++L R+AR +G +YV  EAKL FV+RIRGIN + PK+ K    L
Sbjct: 61  QEKELVQLKREARMKGGFYVSPEAKLLFVVRIRGINAMHPKTRKILQLL 109



 Score = 36.3 bits (80), Expect = 0.026
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = +3

Query: 99  KLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEY 254
           K   VPESVLK             +  L  +  A++ ++ IF RA+QY +EY
Sbjct: 7   KAAVVPESVLKKRKREEQWAADRKEKALAEKKKAVESRKLIFARAKQYAQEY 58


>04_04_1075 +
           30634141-30634320,30634917-30635014,30635113-30635170,
           30635259-30635338,30635686-30635788,30635847-30636080
          Length = 250

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 51/119 (42%), Positives = 69/119 (57%), Gaps = 7/119 (5%)
 Frame = +1

Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
           + RK+LQL RLRQI NGVF+++NKAT+NML   EPY+A+GYPN + SV           +
Sbjct: 100 KTRKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVAYGYPNLK-SVRELIYKRGYGKL 158

Query: 559 DNVYQSLSNS-IVEKR------LHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFKFE 714
           +     L+N+ ++E+       L KH IIC+ED       VG        NFLWPFK +
Sbjct: 159 NKQRIPLTNNKVIEESWCLYQGLGKHDIICIEDLVHEIMTVGPHFKEAN-NFLWPFKLK 216



 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 23/49 (46%), Positives = 34/49 (69%)
 Frame = +2

Query: 260 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
           +E++ ++L R+AR +G +YV  E KL FV+RIRGIN + PK+ K    L
Sbjct: 60  QEKELVQLKREARMKGGFYVSPEEKLLFVVRIRGINAMHPKTRKILQLL 108



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 20/28 (71%), Positives = 24/28 (85%)
 Frame = +3

Query: 495 GIPQLKSVRELVYKRGFAKLSGQRIPIT 578
           G P LKSVREL+YKRG+ KL+ QRIP+T
Sbjct: 139 GYPNLKSVRELIYKRGYGKLNKQRIPLT 166



 Score = 32.7 bits (71), Expect = 0.32
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 111 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYASR 263
           VPESVL+             +  +  +  +I+ ++ IF RA+QY +EY ++
Sbjct: 10  VPESVLRKRKREEVWAAASKEKAVAEKKKSIESRKLIFSRAKQYAEEYEAQ 60


>08_02_1442 +
           27120604-27120890,27121029-27121166,27121280-27121382,
           27121877-27122036,27122927-27123114,27123203-27124770,
           27124882-27125869,27126595-27127098,27127347-27127433,
           27127753-27127821,27128012-27128041
          Length = 1373

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 37/112 (33%), Positives = 60/112 (53%), Gaps = 1/112 (0%)
 Frame = +1

Query: 382 VRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*VD 561
           +R++L+  RL Q+  GVF++   AT+  L + EP+I +G+PN + +V           +D
Sbjct: 104 MRRILRKLRLTQVLTGVFLKATDATMKRLLVVEPFITYGFPNLK-NVKDLIYKKGRGFLD 162

Query: 562 -NVYQSLSNSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFKFE 714
              +   SN ++EK L ++ IIC+ED     + VG        NFL PFK +
Sbjct: 163 KEPFPLTSNDLIEKALGEYGIICLEDLVHEIASVGPHFREAS-NFLMPFKLK 213


>12_01_0642 + 5414964-5415410,5415535-5416677
          Length = 529

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +2

Query: 242 RQGIRIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSP 379
           R+ +R++  D+I LAR A  RG Y   GEA      R   +++ +P
Sbjct: 407 RERVRLEAADDIALARAAAERGAY---GEAARILDARREALSRSAP 449


>12_02_0025 +
           12408933-12409464,12409590-12409686,12410121-12410127,
           12412339-12412465,12412907-12413136
          Length = 330

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 556 VDNVYQSLSNSIVEKRLHKHHIICVEDSSMRSSLVGRKV 672
           V N+ Q   N + EK+  KH    + + S +  L G ++
Sbjct: 214 VQNIQQKEENDVTEKKEEKHEAPAIYEDSFQGKLNGAEI 252


>08_01_0410 + 3661304-3661383,3661494-3661673,3661757-3661870,
            3661975-3662133,3662193-3662243,3662838-3663018,
            3663102-3663228,3663322-3663431,3663529-3663667,
            3663767-3663876,3664002-3664071,3664247-3664320,
            3664458-3664553,3664682-3664777,3665041-3665168,
            3665422-3665656,3665743-3665910,3666274-3666381,
            3666468-3666617,3666905-3667015,3667118-3667297,
            3667427-3667555,3667819-3667914,3668108-3668293,
            3668431-3668603,3668720-3668921
          Length = 1150

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -3

Query: 713  SNLKGHRKLTRVTGTFLPTSEDLMDESSTQIMWCLWSL 600
            S LKGH K  ++TG     S +++  S      C WS+
Sbjct: 935  SKLKGHSK--KITGLAFSQSMNMLVSSGADAQLCAWSI 970


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,615,358
Number of Sequences: 37544
Number of extensions: 402355
Number of successful extensions: 951
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)