Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30125
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   1.3  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   5.3  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    22   5.3  
AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier...    22   5.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.3  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 670  LFSQQVKISWMSP 632
            L SQ ++ISWMSP
Sbjct: 1093 LTSQTIRISWMSP 1105


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 583 NSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFL 696
           N + EK  ++H+   V  S+   S VGRK  + ++  +
Sbjct: 464 NFLPEKTANRHYYAFVPFSAGPRSCVGRKYAMLKLKIV 501


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -2

Query: 543 IHVCILTHGHSLVGVSPSNVR 481
           +H+C+L  GH + G    N++
Sbjct: 114 LHICMLELGHEVCGRFYGNIQ 134


>AY736135-1|AAU84701.1|  253|Apis mellifera take-out-like carrier
           protein JHBP-1 protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 160 LGDYRLR*RGVLLPSRRRGKSS 225
           + DY++  + +LLP R  GKS+
Sbjct: 128 VADYKIEGKVLLLPVRGAGKSN 149


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 350 RIRGINQVSPKSVKFCNCLDC 412
           +  GI+  +P     C+CLDC
Sbjct: 312 KYEGISS-TPSQASSCSCLDC 331


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,384
Number of Sequences: 438
Number of extensions: 4522
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)