Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30125
(751 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C) 89 3e-18
At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C) 89 3e-18
At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) simila... 89 4e-18
At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) simila... 89 4e-18
At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) simila... 89 4e-18
At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B) 85 4e-17
At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) simila... 43 2e-04
At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 ... 31 1.1
>At2g44120.2 68415.m05488 60S ribosomal protein L7 (RPL7C)
Length = 247
Score = 89.0 bits (211), Expect = 3e-18
Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Frame = +1
Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
+ +K+LQL RLRQI NGVF+++NKATVNML EPY+ +GYPN + SV +
Sbjct: 103 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLK-SVKELIYKRGYGKL 161
Query: 559 DNVYQSLS-NSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFKFE 714
++ +L+ NSIV++ L KH IICVED VG NFLWPF+ +
Sbjct: 162 NHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEAN-NFLWPFQLK 213
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = +2
Query: 260 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 63 KDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 111
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 111 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYASRN 266
VPESVLK + + +++ ++ IFKRAEQY KEYA ++
Sbjct: 13 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKD 64
>At2g44120.1 68415.m05487 60S ribosomal protein L7 (RPL7C)
Length = 242
Score = 89.0 bits (211), Expect = 3e-18
Identities = 52/113 (46%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Frame = +1
Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
+ +K+LQL RLRQI NGVF+++NKATVNML EPY+ +GYPN + SV +
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATVNMLRRVEPYVTYGYPNLK-SVKELIYKRGYGKL 156
Query: 559 DNVYQSLS-NSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFKFE 714
++ +L+ NSIV++ L KH IICVED VG NFLWPF+ +
Sbjct: 157 NHQRIALTDNSIVDQALGKHGIICVEDLIHEIMTVGPHFKEAN-NFLWPFQLK 208
Score = 55.2 bits (127), Expect = 4e-08
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = +2
Query: 260 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
K+ + IRL R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 58 KDNELIRLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +3
Query: 111 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYASRN 266
VPESVLK + + +++ ++ IFKRAEQY KEYA ++
Sbjct: 8 VPESVLKKIKRQEEWALAKKDEAVAAKKKSVEARKLIFKRAEQYAKEYAEKD 59
>At3g13580.3 68416.m01710 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 88.6 bits (210), Expect = 4e-18
Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Frame = +1
Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
+ +K+LQL RLRQI NGVF+++NKAT+NML EPY+ +GYPN + SV +
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLK-SVKELIYKRGFGKL 158
Query: 559 DNVYQSLS-NSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFKFE 714
++ +L+ NSIV++ L KH IICVED VG NFLWPF+ +
Sbjct: 159 NHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEAN-NFLWPFQLK 210
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = +2
Query: 260 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 60 KERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 90 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYASR 263
+++ VPESVLK Q + +K++ IF RA+QY KEY +
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEK 60
>At3g13580.2 68416.m01709 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 88.6 bits (210), Expect = 4e-18
Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Frame = +1
Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
+ +K+LQL RLRQI NGVF+++NKAT+NML EPY+ +GYPN + SV +
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLK-SVKELIYKRGFGKL 158
Query: 559 DNVYQSLS-NSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFKFE 714
++ +L+ NSIV++ L KH IICVED VG NFLWPF+ +
Sbjct: 159 NHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEAN-NFLWPFQLK 210
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = +2
Query: 260 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 60 KERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 90 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYASR 263
+++ VPESVLK Q + +K++ IF RA+QY KEY +
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEK 60
>At3g13580.1 68416.m01708 60S ribosomal protein L7 (RPL7D) similar
to 60S ribosomal protein L7 GB:AAD14525 GI:4262232 from
[Arabidopsis thaliana]
Length = 244
Score = 88.6 bits (210), Expect = 4e-18
Identities = 51/113 (45%), Positives = 70/113 (61%), Gaps = 1/113 (0%)
Frame = +1
Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
+ +K+LQL RLRQI NGVF+++NKAT+NML EPY+ +GYPN + SV +
Sbjct: 100 KTKKILQLLRLRQIFNGVFLKVNKATINMLRRVEPYVTYGYPNLK-SVKELIYKRGFGKL 158
Query: 559 DNVYQSLS-NSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFKFE 714
++ +L+ NSIV++ L KH IICVED VG NFLWPF+ +
Sbjct: 159 NHQRTALTDNSIVDQGLGKHGIICVEDLIHEIMTVGPHFKEAN-NFLWPFQLK 210
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/49 (53%), Positives = 35/49 (71%)
Frame = +2
Query: 260 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
KER+ I+L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 60 KERELIQLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 108
Score = 32.7 bits (71), Expect = 0.27
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 90 DSKKLPAVPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYASR 263
+++ VPESVLK Q + +K++ IF RA+QY KEY +
Sbjct: 3 EAESKTVVPESVLKKRKREEEWALAKKQELEAAKKQNAEKRKLIFNRAKQYSKEYQEK 60
>At2g01250.1 68415.m00037 60S ribosomal protein L7 (RPL7B)
Length = 242
Score = 85.4 bits (202), Expect = 4e-17
Identities = 50/113 (44%), Positives = 69/113 (61%), Gaps = 1/113 (0%)
Frame = +1
Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
+ +K+LQL RLRQI NGVF+++NKAT+NML EPY+ +G+PN + SV +
Sbjct: 98 KTKKILQLLRLRQIFNGVFLKVNKATMNMLRRVEPYVTYGFPNLK-SVKELIYKRGYGKL 156
Query: 559 DNVYQSLS-NSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFKFE 714
++ +L+ NSIVE+ L KH IIC ED VG NFLWPF+ +
Sbjct: 157 NHQRIALTDNSIVEQALGKHGIICTEDLIHEILTVGPHFKEAN-NFLWPFQLK 208
Score = 54.8 bits (126), Expect = 6e-08
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = +2
Query: 260 KERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
KE++ I L R+A+ +G +YV EAKL F+IRIRGIN + PK+ K L
Sbjct: 58 KEKELISLKREAKLKGGFYVDPEAKLLFIIRIRGINAIDPKTKKILQLL 106
Score = 35.9 bits (79), Expect = 0.029
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +3
Query: 111 VPESVLKHXXXXXXXXXXXLQVTLKRRSSAIKKKREIFKRAEQYVKEYASR 263
VPESVLK Q + + ++ IFKRAEQY KEYA +
Sbjct: 8 VPESVLKKRKREEEWALEKKQNVEAAKKKNAENRKLIFKRAEQYSKEYAEK 58
>At1g80750.1 68414.m09474 60S ribosomal protein L7 (RPL7A) similar
to ribosomal protein L7 GB:AAA03081 GI:307388 from [Homo
sapiens]
Length = 247
Score = 43.2 bits (97), Expect = 2e-04
Identities = 29/114 (25%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
Frame = +1
Query: 379 EVRKVLQLFRLRQINNGVFVRLNKATVNMLSIAEPYIAWGYPN*RVSVS*YTNVDSPS*V 558
+ +++L +L+ + GVF + + L +PY+ +GYPN + SV + +
Sbjct: 102 KTKRILNNLQLKSVFTGVFAKATDSLFQKLLKVQPYVTYGYPNDK-SVKDLIYKKGCTII 160
Query: 559 D-NVYQSLSNSIVEKRLHKHHIICVEDSSMRSSLVGRKVPVTRVNFLWPFKFEQ 717
+ N N+I+E+ L +H I+ +ED + VG + FL P K +
Sbjct: 161 EGNPVPLTDNNIIEQALGEHKILGIEDLVNEIARVGDHFREV-MRFLGPLKLNK 213
Score = 35.9 bits (79), Expect = 0.029
Identities = 18/51 (35%), Positives = 30/51 (58%)
Frame = +2
Query: 254 RIKERDEIRLARQARNRGNYYVPGEAKLAFVIRIRGINQVSPKSVKFCNCL 406
R KE D IR+ ++ + + P ++ L F+IRI+G N + PK+ + N L
Sbjct: 60 RAKEVDMIRMKQRVKRPKSSPPPVKSDLVFIIRIQGKNDMHPKTKRILNNL 110
>At5g27030.1 68418.m03224 WD-40 repeat family protein contains 8 WD-40
repeats (PF00400) (2 weak)
Length = 1108
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -3
Query: 713 SNLKGHRKLTRVTGTFLPTSEDLMDESSTQIMWCLWSL 600
S LKGH+K R+TG T+ +++ S C WS+
Sbjct: 898 SKLKGHQK--RITGLAFSTALNILVSSGADAQICFWSI 933
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,995,996
Number of Sequences: 28952
Number of extensions: 333985
Number of successful extensions: 863
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 805
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 843
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1663169840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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