Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30124
         (668 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces pombe...    63   4e-11
SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr 2...    25   7.5  

>SPMIT.11 |cox2||cytochrome c oxidase 2|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 248

 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 5/103 (4%)
 Frame = +1

Query: 259 PLITLKSIGHQ*Y*RYEYSDF-----NNIEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXX 423
           P +T+K+IG Q +  YE +DF       + FDSY++P  +++    R L+VD        
Sbjct: 109 PSMTVKAIGRQWFWSYELNDFVTNENEPVSFDSYMVPEEDLEEGSLRQLEVDNRLVLPID 168

Query: 424 XXXXXXXTATDVIHS*TIPSLGVKVDANQVD*IKQTSLLIDLE 552
                  T+ DVIHS  +PSLG+K D      + Q SL ID E
Sbjct: 169 TRIRLILTSGDVIHSWAVPSLGIKCDCIP-SRLNQVSLSIDRE 210



 Score = 62.1 bits (144), Expect = 7e-11
 Identities = 23/49 (46%), Positives = 36/49 (73%)
 Frame = +3

Query: 501 C*SGRLNQTNFFINRPGIFFGQCSEICGANHSFIPIGIESISIKNFINW 647
           C   RLNQ +  I+R G+F+GQCSE+CG  HS +PI ++ +S+++F+ W
Sbjct: 195 CIPSRLNQVSLSIDREGLFYGQCSELCGVLHSSMPIVVQGVSLEDFLAW 243



 Score = 48.0 bits (109), Expect = 1e-06
 Identities = 21/38 (55%), Positives = 28/38 (73%)
 Frame = +2

Query: 140 RFLLEGQIIELI*TIIPAFTLIFIALPSLRLLYLLDEL 253
           ++   G I+E I T+IPA  LI +ALPS +LLYLLDE+
Sbjct: 69  KYTTHGSIVEFIWTLIPALILILVALPSFKLLYLLDEV 106


>SPBC1711.12 |||serine peptidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 683

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = -1

Query: 425 LFIGKIIRLSTSNSRNSLFFISLDGIIYESNSILLKSE 312
           LF+    R +T  SRN+L+FI LD     SN   + SE
Sbjct: 165 LFVRHWDRWNTG-SRNTLYFIELDKKTENSNYFEISSE 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,059,688
Number of Sequences: 5004
Number of extensions: 35327
Number of successful extensions: 62
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)