Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30124
         (668 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                        86   2e-17
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                        86   2e-17
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                        81   6e-16
SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.0  

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 34/46 (73%), Positives = 41/46 (89%)
 Frame = +3

Query: 510 GRLNQTNFFINRPGIFFGQCSEICGANHSFIPIGIESISIKNFINW 647
           GRLNQT FFI RPG+F+GQCSEICGANHSF+PI IE++S+  +INW
Sbjct: 187 GRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVSLDKYINW 232



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
 Frame = +1

Query: 256 NPLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXX 429
           +P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD          
Sbjct: 100 DPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTH 159

Query: 430 XXXXXTATDVIHS*TIPSLGVKVDA 504
                TA DVIHS  +P+L VK+DA
Sbjct: 160 VRVLITAADVIHSFAVPALAVKMDA 184



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 31/85 (36%), Positives = 46/85 (54%)
 Frame = +2

Query: 2   LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 181
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 182 IIPAFTLIFIALPSLRLLYLLDELI 256
           IIPA  LIFIA PSL+LLYL+DE++
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVM 99


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score = 86.2 bits (204), Expect = 2e-17
 Identities = 34/46 (73%), Positives = 41/46 (89%)
 Frame = +3

Query: 510 GRLNQTNFFINRPGIFFGQCSEICGANHSFIPIGIESISIKNFINW 647
           GRLNQT FFI RPG+F+GQCSEICGANHSF+PI IE++S+  +INW
Sbjct: 187 GRLNQTGFFIKRPGVFYGQCSEICGANHSFMPIVIEAVSLDKYINW 232



 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
 Frame = +1

Query: 256 NPLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXX 429
           +P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD          
Sbjct: 100 DPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTH 159

Query: 430 XXXXXTATDVIHS*TIPSLGVKVDA 504
                TA DVIHS  +P+L VK+DA
Sbjct: 160 VRVLITAADVIHSFAVPALAVKMDA 184



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 31/85 (36%), Positives = 46/85 (54%)
 Frame = +2

Query: 2   LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 181
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 182 IIPAFTLIFIALPSLRLLYLLDELI 256
           IIPA  LIFIA PSL+LLYL+DE++
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVM 99


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score = 81.4 bits (192), Expect = 6e-16
 Identities = 37/85 (43%), Positives = 55/85 (64%), Gaps = 2/85 (2%)
 Frame = +1

Query: 256 NPLITLKSIGHQ*Y*RYEYSDFNN--IEFDSYIIPSNEIKNNEFRLLDVDXXXXXXXXXX 429
           +P +T+K++GHQ Y  YEYSD+ +  +EFDSY++P+ ++   +FRLL+VD          
Sbjct: 100 DPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVDNRLVVPINTH 159

Query: 430 XXXXXTATDVIHS*TIPSLGVKVDA 504
                TA DVIHS  +P+L VK+DA
Sbjct: 160 VRVLITAADVIHSFAVPALAVKMDA 184



 Score = 57.6 bits (133), Expect = 9e-09
 Identities = 31/85 (36%), Positives = 46/85 (54%)
 Frame = +2

Query: 2   LNLQNGASPLIEQXXXXXXXXXXXXXXXXXXXXXXXXSLFFNKYINRFLLEGQIIELI*T 181
           L+LQ+ A P++E+                             K   R+L++G ++E+I T
Sbjct: 15  LSLQDAAHPVMEEIIFFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWT 74

Query: 182 IIPAFTLIFIALPSLRLLYLLDELI 256
           IIPA  LIFIA PSL+LLYL+DE++
Sbjct: 75  IIPAIILIFIAFPSLKLLYLMDEVM 99


>SB_35461| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 12/40 (30%), Positives = 23/40 (57%)
 Frame = +2

Query: 185 IPAFTLIFIALPSLRLLYLLDELITH*LH*NLSDINDTED 304
           +PA T++++ LP   ++Y  DE+       +  +IND+ D
Sbjct: 362 LPAMTVLYLTLPGTAVMYYGDEIGLMDADISKGEINDSRD 401


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,353,814
Number of Sequences: 59808
Number of extensions: 207326
Number of successful extensions: 310
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 277
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 307
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1729817375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)