Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30123
(443 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces pombe... 80 1e-16
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce... 38 0.001
SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces ... 31 0.060
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc... 27 0.98
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha... 27 1.7
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 2.3
SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharo... 26 3.0
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 4.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 4.0
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 25 4.0
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|... 25 5.2
SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces po... 25 5.2
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc... 25 6.9
SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces pomb... 25 6.9
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 24 9.1
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar... 24 9.1
>SPCC1223.07c |||aspartate-tRNA ligase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 580
Score = 80.2 bits (189), Expect = 1e-16
Identities = 34/61 (55%), Positives = 44/61 (72%)
Frame = +3
Query: 255 DLRTPANQAVFRIEAGVCRLFREILTKKGFVEIHTPKIISAASISGANVFTVSYFKSSAY 434
DLRTP NQA+F I+AG+C+ FRE L F EIHTPK+ A+S G+NVF + YFK+ +
Sbjct: 244 DLRTPTNQAIFDIQAGICQAFREFLLSNSFNEIHTPKMSGASSEGGSNVFKIQYFKTDGF 303
Query: 435 L 437
L
Sbjct: 304 L 304
Score = 64.5 bits (150), Expect = 7e-12
Identities = 37/93 (39%), Positives = 56/93 (60%), Gaps = 8/93 (8%)
Frame = +1
Query: 1 VKFTGNITRESIVDVEASVVRTAAPVESCTIKDVELVAHQIWTVSSARSQLPLQIEDAAR 180
VK+ G+I+ ESIV VE V ++ ++S T++D E+ I+ +S + LP +EDA R
Sbjct: 151 VKWCGSISLESIVLVEGIVKKSPEIIKSATVQDAEIHISSIYVISPIKKNLPFLVEDAGR 210
Query: 181 PEK--------SDEPEALKIRVNQDTRLDNRVL 255
E+ + E ++ +RVN DTRLDNRVL
Sbjct: 211 SEEQIRESEENAAEGDSKFVRVNLDTRLDNRVL 243
>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 568
Score = 37.5 bits (83), Expect = 0.001
Identities = 22/86 (25%), Positives = 34/86 (39%)
Frame = +3
Query: 180 TGEE**AGSLEDPREPGHPARQSGFDLRTPANQAVFRIEAGVCRLFREILTKKGFVEIHT 359
TGEE L EP + Q +R +V ++ A R R+ E+
Sbjct: 230 TGEEAFTNRLNAEAEPSYLLDQRHLVIRGETASSVLKVRARALRAMRDTFENLKMTEVTP 289
Query: 360 PKIISAASISGANVFTVSYFKSSAYL 437
P ++ GA +F +Y+ AYL
Sbjct: 290 PCMVQTQVEGGATLFKFNYYGQDAYL 315
>SPBC1198.10c |||asparagine-tRNA ligase Slm5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 441
Score = 31.5 bits (68), Expect = 0.060
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 258 LRTPANQAVFRIEAGVCRLFREILTKKGFVEIHTPKIISAASISGANVFTVS 413
LRT +FR+ + + R+ + K F E + P I S+ VFT++
Sbjct: 127 LRTAKQGEIFRLRSDSLKALRQFFSSKDFTETNPPIITSSDCEGAGEVFTLT 178
>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 493
Score = 27.5 bits (58), Expect = 0.98
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -1
Query: 356 VDLDEAFLREDFPEEPADPGLDPEDGLVSRRAQIKTRL 243
V++ +AFL+E F ++P D +D ++ R + K L
Sbjct: 273 VEITDAFLKEFFNDQPTDDTKVYDDDYINERGEKKLSL 310
>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1011
Score = 26.6 bits (56), Expect = 1.7
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = -2
Query: 316 KSLQTPASILKTAWLAGVRRS 254
K +Q P S+L T W+ +RRS
Sbjct: 693 KVIQAPNSLLNTLWILNMRRS 713
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 26.2 bits (55), Expect = 2.3
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -2
Query: 322 SLKSLQTPASILKTAWLAGVRRSKPD 245
++KS QTP+SILKT + S PD
Sbjct: 912 AIKSSQTPSSILKTPQSFFIPPSTPD 937
>SPAPB8E5.07c |||ribosome biogenesis protein Rrp12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1163
Score = 25.8 bits (54), Expect = 3.0
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = -1
Query: 350 LDEAFLREDFPEEPAD 303
+DEAF++ED EEP D
Sbjct: 1022 MDEAFVQEDNDEEPLD 1037
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.4 bits (53), Expect = 4.0
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = -1
Query: 137 LDTVHI**ATSSTSLIVHDSTGAAVLTTEASTSTI 33
LDT+H TSST I+ DS T + TST+
Sbjct: 22 LDTLH----TSSTEQIIKDSENVVHTTLKLPTSTL 52
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.4 bits (53), Expect = 4.0
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -1
Query: 107 SSTSLIVHDSTGAAVLTTEASTSTIDSLVMLPV 9
+ T +V ++TGAA T S T DSL + P+
Sbjct: 542 AETDALVSENTGAASQKTSKSYKTNDSLKVPPL 574
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 25.4 bits (53), Expect = 4.0
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = -1
Query: 329 EDFPEEPADPGLDPEDGLVSRRAQIKTRLSSRVSWFTRIFK 207
E+ EEP+ P E+ VS++ T SSR+ ++F+
Sbjct: 292 EEMNEEPSKPIEQTENNEVSQQDSSVTNTSSRILGIPQLFQ 332
>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 843
Score = 25.0 bits (52), Expect = 5.2
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +2
Query: 77 SNRAQLRTW-NWWLIRYGRYRAPDPSFLC 160
SNRA ++ N W + Y + P P FLC
Sbjct: 556 SNRAHVKLIDNIWTVIYFIFNVPFPVFLC 584
>SPBC21C3.03 |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 674
Score = 25.0 bits (52), Expect = 5.2
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -2
Query: 370 IIFGVWISTKPFFVRISLKSLQTPASILKTAWL 272
IIF I T PF IS L++ +S+ + WL
Sbjct: 145 IIFSPIIITLPFIALISFLHLRSLSSLTVSIWL 177
>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 713
Score = 24.6 bits (51), Expect = 6.9
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 263 AQIKTRLSSRVSWFTRIFK 207
A+++ RLSS SWF+ I++
Sbjct: 571 ARLRMRLSSPDSWFSNIYR 589
>SPAC2C4.17c |||MS ion channel protein 2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 840
Score = 24.6 bits (51), Expect = 6.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 313 SLQTPASILKTAWLAGVRRSKP 248
++Q P S+L T ++ +RRS+P
Sbjct: 539 TVQAPNSLLNTLFIENLRRSQP 560
>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 386
Score = 24.2 bits (50), Expect = 9.1
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = -1
Query: 410 DGEHVSAANGRGRYNLRRVDLDEAFLREDFPEEPADPGLD 291
D E + + + N+ L ++F++ D P P D LD
Sbjct: 227 DNERLENEHRTEKLNVNANSLGKSFVKHDIPLPPVDLKLD 266
>SPAC9G1.10c |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1191
Score = 24.2 bits (50), Expect = 9.1
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 2/75 (2%)
Frame = +1
Query: 37 VDVEASVVRTAAPVESCTIKDVELVAHQIWTVSSARSQLPLQIEDAARPEKSDEPEALKI 216
VDV+ + T V +C I V + +++WT+ Q ++ P +++
Sbjct: 533 VDVQNHHIVTKKSVSNCPITYVMVYKNEMWTLDDMGKLYVWQEDEIMGLSIQSTPHSIRT 592
Query: 217 --RVNQDTRLDNRVL 255
LDNR+L
Sbjct: 593 IPHATHAMVLDNRLL 607
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.128 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,687,738
Number of Sequences: 5004
Number of extensions: 32707
Number of successful extensions: 110
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 162176800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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