Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30123
(443 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.7
SB_32785| Best HMM Match : Spectrin (HMM E-Value=6e-06) 29 2.3
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19) 29 2.3
SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24) 28 3.0
SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39) 28 3.0
SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 5.3
SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37) 27 5.3
SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22) 27 7.0
SB_25619| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37) 27 7.0
SB_40170| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20) 27 7.0
SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013) 27 7.0
SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.0
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_55596| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05) 27 9.2
SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_50003| Best HMM Match : PAN (HMM E-Value=0.044) 27 9.2
SB_39050| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21) 27 9.2
SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07) 27 9.2
SB_23566| Best HMM Match : 7tm_1 (HMM E-Value=0.00015) 27 9.2
SB_16646| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0) 27 9.2
SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 131
Score = 29.1 bits (62), Expect = 1.7
Identities = 17/45 (37%), Positives = 23/45 (51%)
Frame = -1
Query: 386 NGRGRYNLRRVDLDEAFLREDFPEEPADPGLDPEDGLVSRRAQIK 252
N R R +R V+ A LRE PEEP+D + + L + IK
Sbjct: 59 NERERIRVRHVNEGYARLREHLPEEPSDKRMSKVETLRAAIRYIK 103
>SB_32785| Best HMM Match : Spectrin (HMM E-Value=6e-06)
Length = 441
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 281 GLVSRRAQIKTRLSSRVSWFTRIFK 207
GL SR A ++ +LS RV+W R+ K
Sbjct: 266 GLGSRCASLRRQLSDRVTWLERVVK 290
>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3306
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 281 GLVSRRAQIKTRLSSRVSWFTRIFK 207
GL SR A ++ +LS RV+W R+ K
Sbjct: 2294 GLGSRCASLRRQLSDRVTWLERVVK 2318
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -2
Query: 343 KPFFVRISLKSLQTPASILKTAWLAGVRRSKPDCRAGC 230
+PF I L L T +L+ W AG + +C+ C
Sbjct: 1286 EPFTFCIKLVQLATTTKMLRQKWFAGSKTLNVNCQKSC 1323
>SB_35149| Best HMM Match : DUF1172 (HMM E-Value=0.19)
Length = 1150
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = -1
Query: 110 TSSTSLIVHDSTGAAVLTTEASTSTIDSLVMLP 12
T S ++ +H++TGA + T + + S+ DS V P
Sbjct: 800 TQSRAVTIHEATGARITTAQEALSSRDSGVTSP 832
>SB_51776| Best HMM Match : S-antigen (HMM E-Value=0.24)
Length = 1669
Score = 28.3 bits (60), Expect = 3.0
Identities = 23/83 (27%), Positives = 37/83 (44%)
Frame = -2
Query: 352 ISTKPFFVRISLKSLQTPASILKTAWLAGVRRSKPDCRAGCPGSRGSSRLPAHHSSPVWP 173
++T FF + K L + S+ + RR + GCPG+ S +P P
Sbjct: 1530 VNTGYFFTPFTDKRLYSTMSLSRMFSKLKARRGESSSDDGCPGNPTS--IPC----PPAV 1583
Query: 172 RLRSAEEAGIWRSIPSISDEPPV 104
R+ ++ GI R IP I+D +
Sbjct: 1584 RVYTSVSPGIGRIIPIIADSKDI 1606
>SB_11363| Best HMM Match : Transposase_11 (HMM E-Value=2.3e-39)
Length = 402
Score = 28.3 bits (60), Expect = 3.0
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 228 GHPARQSGFDLRTPANQAVFRIEAGVCRLFREILTKKGFVEIHTPKIISAASISGANVFT 407
G A++ G+D AN R RL E+L G+ I ++ AA++ N+FT
Sbjct: 336 GVHAQKQGWDKHFQANTVRNRNVLSTVRLGMEVLRHSGYT-ITREDLLVAATLLAQNLFT 394
Query: 408 VSY 416
Y
Sbjct: 395 HGY 397
>SB_4237| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1438
Score = 27.5 bits (58), Expect = 5.3
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 22 TRESIVDVEASVVRTAAPVESCTIKDVELVAHQIWTVSSARSQLPLQIEDAARP 183
T E + + EASV T AP+E D E V + + ++ +E+ P
Sbjct: 1114 TEEPVKEAEASVEITEAPIEEAEAPD-ERVESSVEEAEAPEEEVKAPVEEVEAP 1166
>SB_40082| Best HMM Match : tRNA-synt_2 (HMM E-Value=8.1e-37)
Length = 479
Score = 27.5 bits (58), Expect = 5.3
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 372 SAASISGANVFTVSYFK 422
++AS GANVF VSYFK
Sbjct: 192 TSASEGGANVFEVSYFK 208
>SB_54349| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 971
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 96 GRGTGGSSDMDGIERQIPASSADRRRGQT 182
GRG G + GI+ QI SAD+ G T
Sbjct: 248 GRGRGRARRSGGIQHQITEESADKDSGVT 276
>SB_49264| Best HMM Match : Ank (HMM E-Value=3.7e-22)
Length = 775
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/22 (54%), Positives = 12/22 (54%)
Frame = -2
Query: 247 DCRAGCPGSRGSSRLPAHHSSP 182
D A CP R S LPAH SP
Sbjct: 248 DLLAKCPKKRLSGELPAHQMSP 269
>SB_25619| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1038
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 96 GRGTGGSSDMDGIERQIPASSADRRRGQT 182
GRG G + GI+ QI SAD+ G T
Sbjct: 334 GRGLGPARRSGGIQHQITEESADKDSGVT 362
>SB_5738| Best HMM Match : zf-CCHC (HMM E-Value=0.37)
Length = 700
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 96 GRGTGGSSDMDGIERQIPASSADRRRGQT 182
GRG G + GI+ QI SAD+ G T
Sbjct: 523 GRGRGRARRSGGIQHQITEESADKDSGVT 551
>SB_40170| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 537
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +3
Query: 9 HRQHHERVDSRRGGFGREDGRPSRIVHN*GRGTGGSSDMDGIERQIPAS--SADRRR 173
HRQ +S+R +DGRP R GR SD R + +S S DR R
Sbjct: 166 HRQEGREQESKRDSQNGDDGRPHREERQVGRDHRHESDR---RRDLTSSRLSGDRSR 219
>SB_23039| Best HMM Match : rve (HMM E-Value=2.8e-20)
Length = 984
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 96 GRGTGGSSDMDGIERQIPASSADRRRGQT 182
GRG G + GI+ QI SAD+ G T
Sbjct: 592 GRGRGRARRSGGIQHQITEESADKDSGVT 620
>SB_18880| Best HMM Match : zf-CCHC (HMM E-Value=0.00013)
Length = 388
Score = 27.1 bits (57), Expect = 7.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 96 GRGTGGSSDMDGIERQIPASSADRRRGQT 182
GRG G + GI+ QI SAD+ G T
Sbjct: 246 GRGRGRARRSGGIQHQITEESADKDSGVT 274
>SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 27.1 bits (57), Expect = 7.0
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +1
Query: 103 ELVAHQIWTVSSARSQLPLQIEDAARPEKSDEPEALK 213
EL+ H + + P++ E+ +PE+ +EPE L+
Sbjct: 328 ELMTHIQSPIQKKTPEEPVKPEEPVKPEEQEEPEELE 364
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 26.6 bits (56), Expect = 9.2
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +2
Query: 290 DRGRGLQALQGNPHEERLRRDPHAED 367
DRG G++ + +PH R + H++D
Sbjct: 541 DRGEGMERARKSPHANRRTKFAHSDD 566
>SB_55596| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-05)
Length = 412
Score = 26.6 bits (56), Expect = 9.2
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 367 IFGVWISTKPFFVRISLKSLQTPAS-ILKTAWLAGVRRSKPDCRAGCPGSRGSSRLPAHH 191
+ G+ ++ P V + S Q P + +L +W+ G R D A C GSRG +
Sbjct: 121 VIGLAVAIPPL-VNWNAYSPQPPLNFLLAESWVQGSRIHAHDWFAKCVGSRGDAFRSYRR 179
Query: 190 SSPVWPRLRSAEEAGI 143
LR A+E +
Sbjct: 180 HKLCLQWLRHAQECRV 195
>SB_55337| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1853
Score = 26.6 bits (56), Expect = 9.2
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +3
Query: 96 GRGTGGSSDMDGIERQIPASSADRRRGQTGEE**AGSLEDPR-EPGHPAR 242
GRG G G+ A D G GE AG L+ P+ EPG P R
Sbjct: 1356 GRGFKGDQGPPGLNGNPGAPGVDGPTGPKGESGIAG-LDGPKGEPGLPGR 1404
>SB_50003| Best HMM Match : PAN (HMM E-Value=0.044)
Length = 286
Score = 26.6 bits (56), Expect = 9.2
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +1
Query: 148 QLPLQIEDAARPEKSDEPEALK 213
QLP + A PEK++EP+ LK
Sbjct: 55 QLPPAPQPTANPEKAEEPQPLK 76
>SB_39050| Best HMM Match : Gal_Lectin (HMM E-Value=2.5e-21)
Length = 203
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/42 (35%), Positives = 23/42 (54%)
Frame = -1
Query: 335 LREDFPEEPADPGLDPEDGLVSRRAQIKTRLSSRVSWFTRIF 210
++ED P E D + EDG RR ++ R+ S +S+ R F
Sbjct: 51 MKEDIPTEVEDDDENEEDGDDRRRNRV-VRMMSLLSYVNREF 91
>SB_32284| Best HMM Match : FGGY_N (HMM E-Value=2.6e-07)
Length = 582
Score = 26.6 bits (56), Expect = 9.2
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -1
Query: 410 DGEHVSAANGRGRYNLRRVDLDEAFLREDFPEEPADPGLDPED 282
DG HV+ NG RYN R V D+ + +D D G +D
Sbjct: 459 DGGHVTDDNGHVRYNDRPVTDDDRPVTDDGGNVTDDNGHVSDD 501
>SB_23566| Best HMM Match : 7tm_1 (HMM E-Value=0.00015)
Length = 356
Score = 26.6 bits (56), Expect = 9.2
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 1/76 (1%)
Frame = -2
Query: 367 IFGVWISTKPFFVRISLKSLQTPAS-ILKTAWLAGVRRSKPDCRAGCPGSRGSSRLPAHH 191
+ G+ ++ P V + S Q P + +L +W+ G R D A C GSRG +
Sbjct: 121 VIGLAVAIPPL-VNWNAYSPQPPLNFLLAESWVQGSRIHAHDWFAKCVGSRGDAFRSYRR 179
Query: 190 SSPVWPRLRSAEEAGI 143
LR A+E +
Sbjct: 180 HKLCLQWLRHAQECRV 195
>SB_16646| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 145
Score = 26.6 bits (56), Expect = 9.2
Identities = 21/86 (24%), Positives = 38/86 (44%)
Frame = -2
Query: 355 WISTKPFFVRISLKSLQTPASILKTAWLAGVRRSKPDCRAGCPGSRGSSRLPAHHSSPVW 176
W F++R ++ Q P I T + + +KP R P S+ + L + S+ +
Sbjct: 36 WSLRITFYIRPKWEA-QPPIKIGPTGYSSDFC-AKPLSRRSPPPSKLGNVLHGYPSNVTF 93
Query: 175 PRLRSAEEAGIWRSIPSISDEPPVPR 98
P R + +W+ P + PP+ R
Sbjct: 94 PYTRPGQTVTLWKPFPVL---PPLER 116
>SB_40268| Best HMM Match : NO_synthase (HMM E-Value=0)
Length = 465
Score = 26.6 bits (56), Expect = 9.2
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 95 RTWNWWLIRYGRYRAPDPSFL 157
R WN LI+Y Y+ PD S +
Sbjct: 388 RVWNTQLIQYAGYKQPDGSVI 408
>SB_27758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1926
Score = 26.6 bits (56), Expect = 9.2
Identities = 18/60 (30%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 15 QHHERVDSRRGGFGREDGRPSRIVHN*GRGTGGSSDMDGIE-RQIPASSADRRRGQTGEE 191
+H R D+RR + GRP + RG SD +E + P ++RR +G E
Sbjct: 1514 KHFTRDDNRRNEDRIQPGRPRPRLEPADRGRSQRSDRRSLESERKPLRDSERRAPDSGYE 1573
>SB_21831| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 551
Score = 26.6 bits (56), Expect = 9.2
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +1
Query: 127 TVSSARSQLPLQIEDAARPEKSDEPEALKIRVNQDTRLDNRVLICA 264
TVS A+ + Q+E+ RP + P L+ R N L ++ I A
Sbjct: 498 TVSLAKVNVVHQLEETGRPVQCPYPRRLETRENNFNSLATQIRIKA 543
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.315 0.128 0.362
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,251,383
Number of Sequences: 59808
Number of extensions: 272618
Number of successful extensions: 859
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 871599479
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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