Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30123
         (443 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical pr...    89   1e-18
U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protei...    33   0.093
AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical ...    30   0.87 
AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical ...    30   0.87 
Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical pr...    28   2.7  
AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical...    28   2.7  
Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical pr...    27   4.6  
U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical pr...    27   4.6  
Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z81081-4|CAB03092.2|  491|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical pr...    27   8.1  
Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL023825-1|CAA19442.2|  491|Caenorhabditis elegans Hypothetical ...    27   8.1  
AF052060-1|AAC06226.1|  491|Caenorhabditis elegans Olf-1/EBF tra...    27   8.1  

>Z19152-1|CAA79536.1|  531|Caenorhabditis elegans Hypothetical
           protein B0464.1 protein.
          Length = 531

 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 47/90 (52%), Positives = 64/90 (71%), Gaps = 5/90 (5%)
 Frame = +1

Query: 1   VKFTGNITRESIVDVEASVVRTAAPVESCTIKDVELVAHQIWTVSSARSQLPLQIEDAAR 180
           +KF  +I++ESIVDV A++ +   P+ESCT KDVEL+A Q++ VS++  +LPLQIEDA+R
Sbjct: 126 LKFVSSISKESIVDVYATINKVDNPIESCTQKDVELLAQQVFVVSTSAPKLPLQIEDASR 185

Query: 181 -----PEKSDEPEALKIRVNQDTRLDNRVL 255
                 EK+ E E     VN DTRLDNRV+
Sbjct: 186 RAPTDEEKASEQENQLAVVNLDTRLDNRVI 215



 Score = 89.0 bits (211), Expect = 1e-18
 Identities = 42/61 (68%), Positives = 47/61 (77%)
 Frame = +3

Query: 255 DLRTPANQAVFRIEAGVCRLFREILTKKGFVEIHTPKIISAASISGANVFTVSYFKSSAY 434
           DLRTP + A+FRI+AG+C  FR IL  +GFVEI  PKIISA S  GANVF VSYFK SAY
Sbjct: 216 DLRTPTSHAIFRIQAGICNQFRNILDVRGFVEIMAPKIISAPSEGGANVFEVSYFKGSAY 275

Query: 435 L 437
           L
Sbjct: 276 L 276


>U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protein
           173 protein.
          Length = 325

 Score = 33.1 bits (72), Expect = 0.093
 Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
 Frame = +3

Query: 48  GFGREDGRPSRIVHN*G-RGTGGSSDMDGIERQIPASSADRRRGQTGEE**AGSLEDPRE 224
           G G  DG P       G RG  G +  DG +     S      G TG+E   G + +P +
Sbjct: 235 GEGGPDGIPMEKKSPPGPRGPPGPAGPDGPQGPEGRSGKQGPPGPTGQEGEEGVIGEPGK 294

Query: 225 PGHPARQSGFDLRTPA 272
           PG P +      R PA
Sbjct: 295 PGEPGKSGAAGARGPA 310


>AF077544-2|AAK39243.2|  644|Caenorhabditis elegans Hypothetical
           protein H22K11.2 protein.
          Length = 644

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 12/20 (60%), Positives = 15/20 (75%), Gaps = 3/20 (15%)
 Frame = +2

Query: 107 WWLIR---YGRYRAPDPSFL 157
           WWLIR    G+YR+ DPSF+
Sbjct: 134 WWLIRNTKIGKYRSSDPSFM 153


>AF067618-6|AAC19197.2| 1015|Caenorhabditis elegans Hypothetical
           protein F56H1.5 protein.
          Length = 1015

 Score = 29.9 bits (64), Expect = 0.87
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -1

Query: 401 HVSAANGRGRYNLRRVDLDEAFLREDFPEEPADPGLDPEDG 279
           ++S  NGR        + DEAF+R+D  E   D G D +DG
Sbjct: 405 NISFDNGRSSDEDGMDEEDEAFVRDDDDEGKDDRGSDDDDG 445


>Z99279-6|CAB16498.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -2

Query: 193 HSSPVWPRLRSAEEA-GIWRSIPSISDEP--PVPRP*LCT 83
           H S   P     +E  G W  +PS   EP  PVPRP L T
Sbjct: 468 HGSGSGPMPEQTDEVPGPWEPVPSPVPEPEDPVPRPELAT 507


>Z82284-8|CAB05294.1|  640|Caenorhabditis elegans Hypothetical
           protein Y57G11A.2 protein.
          Length = 640

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/40 (42%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = -2

Query: 193 HSSPVWPRLRSAEEA-GIWRSIPSISDEP--PVPRP*LCT 83
           H S   P     +E  G W  +PS   EP  PVPRP L T
Sbjct: 468 HGSGSGPMPEQTDEVPGPWEPVPSPVPEPEDPVPRPELAT 507


>AF003151-19|AAK18922.1|  988|Caenorhabditis elegans Hypothetical
           protein D1007.7 protein.
          Length = 988

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +2

Query: 281 RLQDRGRGLQALQGNPHEER 340
           +LQ R   LQALQGNP+ +R
Sbjct: 406 QLQQRAAQLQALQGNPNAQR 425


>Z68302-2|CAA92631.1|  630|Caenorhabditis elegans Hypothetical
           protein ZK792.5 protein.
          Length = 630

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 32/112 (28%), Positives = 42/112 (37%), Gaps = 2/112 (1%)
 Frame = +3

Query: 21  HERVDS-RRGGFGREDGRPSRIVHN*GRGTGGSSDMDGIERQIPASSADRRRGQTGEE** 197
           +ER  S  RGG GR  G       N   G GG     G  R+  A   +++ G+ G    
Sbjct: 48  NERFGSGNRGGGGRGRGGDGGFRRNDRGGRGGGGRGFGGNREFSAGDFEKQYGRVGGGDD 107

Query: 198 AGSLEDPREPGHPARQSGFDLRTPANQAVFRIE-AGVCRLFREILTKKGFVE 350
             S   P   G     S  D R   +   F  E  G  R   +I  K+G +E
Sbjct: 108 TNS-GQPDSYGQADSASFNDSRPDGDGREFPKEIVGYLRSIEQIKKKEGKIE 158


>U41031-2|AAA82619.2|  615|Caenorhabditis elegans Hypothetical
           protein C16B8.2 protein.
          Length = 615

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = -1

Query: 353 DLDEAFLREDFPEEPADPGLDPEDGLVSRRAQIKTRLSSRVSW 225
           DL +   R+ + +  +  G  PE+     + + K RLS R+ W
Sbjct: 181 DLGKCNCRDGYQQNMSKSGAIPENEFKRNKRESKPRLSERLEW 223


>U40935-1|AAA81687.1| 1131|Caenorhabditis elegans Hypothetical
           protein F31E3.4 protein.
          Length = 1131

 Score = 27.5 bits (58), Expect = 4.6
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 231 HPARQSGFDLRTPANQAVFRIEAGVCRLFREILTKKGFVEI 353
           HPA    FDL +  N A F IE  +   F +  + K F+ +
Sbjct: 274 HPAGVKMFDLNSNGNSAEFPIETSLISAF-DFSSNKNFIAV 313


>Z98877-14|CAD56615.1|  338|Caenorhabditis elegans Hypothetical
           protein Y69H2.14 protein.
          Length = 338

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
 Frame = +3

Query: 48  GFGREDGRPSRI--VHN*GR-GTGGSSDMDGIERQIPASSADRRRGQTGEE**AGSLEDP 218
           GF   DG+P R       G+ G  G+    G ++    + A  R+G  G    AG    P
Sbjct: 156 GFPGSDGQPGRDGEAGAPGQPGRDGAGGYGGPQQNDCQTCAPARQGAPGPPGPAGQPGQP 215

Query: 219 REPGH 233
            EPGH
Sbjct: 216 GEPGH 220


>Z81081-4|CAB03092.2|  491|Caenorhabditis elegans Hypothetical
           protein Y16B4A.1 protein.
          Length = 491

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 335 LREDFPEEPADPGLDPEDGLVSRRAQIKTRLSSRVS 228
           L++  P+ P DP   P+D ++ R A++   L +R S
Sbjct: 370 LQKLLPKYPGDPERLPKDQILKRAAELAEALYNRTS 405


>Z68752-7|CAA92982.2|  693|Caenorhabditis elegans Hypothetical
           protein T12G3.1 protein.
          Length = 693

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 120 LMSHQFHVLNCARFDWGGRPHDRSLHVDYRLSRDV 16
           ++ H+F  L CA +D   +   +SLH ++ + R V
Sbjct: 191 IIGHRFKCLECADYDLCEKCERKSLHYEHAMIRIV 225


>Z68217-1|CAA92465.1|  461|Caenorhabditis elegans Hypothetical
           protein F58G6.1 protein.
          Length = 461

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 20/70 (28%), Positives = 30/70 (42%)
 Frame = +1

Query: 22  TRESIVDVEASVVRTAAPVESCTIKDVELVAHQIWTVSSARSQLPLQIEDAARPEKSDEP 201
           T++ + D  A+ +   +       KDV+  +  + T+ SA  QL   I DA  PE  D  
Sbjct: 30  TQDEVFDQHAANLNKQSKSCEKLHKDVKNYSSALRTLLSAEKQLRDTIRDAYEPEWPDRE 89

Query: 202 EALKIRVNQD 231
               I  N D
Sbjct: 90  HLTAIFDNLD 99


>AL023825-1|CAA19442.2|  491|Caenorhabditis elegans Hypothetical
           protein Y16B4A.1 protein.
          Length = 491

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 335 LREDFPEEPADPGLDPEDGLVSRRAQIKTRLSSRVS 228
           L++  P+ P DP   P+D ++ R A++   L +R S
Sbjct: 370 LQKLLPKYPGDPERLPKDQILKRAAELAEALYNRTS 405


>AF052060-1|AAC06226.1|  491|Caenorhabditis elegans Olf-1/EBF
           transcription factor protein.
          Length = 491

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -1

Query: 335 LREDFPEEPADPGLDPEDGLVSRRAQIKTRLSSRVS 228
           L++  P+ P DP   P+D ++ R A++   L +R S
Sbjct: 370 LQKLLPKYPGDPERLPKDQILKRAAELAEALYNRTS 405


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.128    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,526,374
Number of Sequences: 27780
Number of extensions: 196744
Number of successful extensions: 891
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 812
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 889
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)