Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30121
(716 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_45540| Best HMM Match : HSP70 (HMM E-Value=0) 161 4e-40
SB_8490| Best HMM Match : HSP70 (HMM E-Value=0) 160 9e-40
SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.) 153 1e-37
SB_45647| Best HMM Match : HSP70 (HMM E-Value=0) 106 2e-23
SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16) 79 5e-15
SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.) 79 5e-15
SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36) 71 1e-12
SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 5e-12
SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07) 61 1e-09
SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 2e-07
SB_47390| Best HMM Match : No HMM Matches (HMM E-Value=.) 49 4e-06
SB_24074| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.043
SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85) 29 2.8
SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5) 29 5.0
SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3) 28 6.6
SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6) 28 6.6
SB_56121| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.7
SB_4931| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-09) 28 8.7
>SB_45540| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1097
Score = 161 bits (392), Expect = 4e-40
Identities = 75/85 (88%), Positives = 82/85 (96%)
Frame = +1
Query: 1 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACETAKRTLSSST 180
VKSTAGDTHLGGEDFDN+MV+HFV++FK+KYKKD+ NKRA+RRLRTACE AKRTLSSST
Sbjct: 219 VKSTAGDTHLGGEDFDNKMVDHFVKQFKQKYKKDITPNKRAMRRLRTACERAKRTLSSST 278
Query: 181 QASIEIDSLFEGIDFYTSITRARFE 255
QASIEIDSLFEGIDFYTSITRARFE
Sbjct: 279 QASIEIDSLFEGIDFYTSITRARFE 303
Score = 130 bits (314), Expect = 1e-30
Identities = 72/136 (52%), Positives = 86/136 (63%), Gaps = 2/136 (1%)
Frame = +3
Query: 255 ELNADLFRSTMEPVEKSLRDAKMD--KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 428
ELN DLF+ T EPVE+++RD+K+ K IHDIVLVGGSTRIPK+QK+LQ+ F GKELNK
Sbjct: 304 ELNQDLFKKTTEPVEQAIRDSKIPGGKESIHDIVLVGGSTRIPKIQKMLQELFGGKELNK 363
Query: 429 SIYPDEXXXXXXXXXXXILHGDNSEEVKDXXXXXXXXXXXGIETAGSVMTTLHYSGNTNQ 608
SI PDE ILHGD + VKD GIETAG VM+ L +T
Sbjct: 364 SINPDEAVAYGAAVQAAILHGDKDDTVKDLLLLDVAPLSMGIETAGGVMSVLIKRNST-- 421
Query: 609 SPT*NRLRHSTTYSDN 656
PT + + TTYSDN
Sbjct: 422 IPT-KQTQTFTTYSDN 436
>SB_8490| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 640
Score = 160 bits (389), Expect = 9e-40
Identities = 76/94 (80%), Positives = 84/94 (89%)
Frame = +1
Query: 1 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACETAKRTLSSST 180
VKSTAGDTHLGGEDFDNR+VNHFV EFKRKYKKD++ N RA+RRLRTACE AKRTLSSST
Sbjct: 220 VKSTAGDTHLGGEDFDNRLVNHFVAEFKRKYKKDMSKNSRAMRRLRTACERAKRTLSSST 279
Query: 181 QASIEIDSLFEGIDFYTSITRARFES*TPICSGL 282
+ASIE+DSLFEGIDFYT I+RARFE +CS L
Sbjct: 280 EASIEVDSLFEGIDFYTKISRARFED---LCSDL 310
Score = 124 bits (298), Expect = 1e-28
Identities = 66/134 (49%), Positives = 84/134 (62%)
Frame = +3
Query: 255 ELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 434
+L +DLF S ++PV K+L DAK K+ IH++VLVGGSTR+PK+QK+L+++F+GK LNKSI
Sbjct: 305 DLCSDLFLSCLDPVNKALSDAKFSKSDIHEVVLVGGSTRVPKIQKMLEEYFSGKSLNKSI 364
Query: 435 YPDEXXXXXXXXXXXILHGDNSEEVKDXXXXXXXXXXXGIETAGSVMTTLHYSGNTNQSP 614
PDE IL GD S+EVKD GIETAG VMT L + P
Sbjct: 365 NPDEAVAYGAAVQAAILSGDKSDEVKDVLLVDVAPLSLGIETAGEVMTKL--IERNARIP 422
Query: 615 T*NRLRHSTTYSDN 656
T + TTYSDN
Sbjct: 423 T-KATQTFTTYSDN 435
>SB_56180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 746
Score = 153 bits (371), Expect = 1e-37
Identities = 72/85 (84%), Positives = 79/85 (92%)
Frame = +1
Query: 1 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACETAKRTLSSST 180
VKST GDTHLGGEDFDN MV+ FV++FK+KYKKD+ NKRALRRLRTACE AKRTLSSST
Sbjct: 312 VKSTHGDTHLGGEDFDNNMVDFFVKQFKQKYKKDITPNKRALRRLRTACERAKRTLSSST 371
Query: 181 QASIEIDSLFEGIDFYTSITRARFE 255
QASIEIDSL++GIDFYTSITRARFE
Sbjct: 372 QASIEIDSLYDGIDFYTSITRARFE 396
Score = 131 bits (316), Expect = 6e-31
Identities = 74/147 (50%), Positives = 93/147 (63%), Gaps = 1/147 (0%)
Frame = +3
Query: 255 ELNADLFRSTMEPVEKSLRDAKMD-KAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKS 431
E+NA LF+ T+EPVEK+++D+K++ K +I +IV+VGGSTRIPK+Q LLQ+FFNGKELNKS
Sbjct: 397 EMNAHLFKKTLEPVEKAIKDSKLESKEKIDEIVMVGGSTRIPKIQSLLQNFFNGKELNKS 456
Query: 432 IYPDEXXXXXXXXXXXILHGDNSEEVKDXXXXXXXXXXXGIETAGSVMTTLHYSGNTNQS 611
I PDE ILHGD SE +D G+ETAG VMT T
Sbjct: 457 INPDEAVAYGAAVQAAILHGDKSEATQDLLLLDVAPLTLGLETAGGVMTAAIKRNTT--I 514
Query: 612 PT*NRLRHSTTYSDNPTRSTSSQVF*G 692
PT + + TTYSDN T S QV+ G
Sbjct: 515 PT-KQTQTFTTYSDNQT-SVLIQVYEG 539
>SB_45647| Best HMM Match : HSP70 (HMM E-Value=0)
Length = 1327
Score = 106 bits (255), Expect = 2e-23
Identities = 66/146 (45%), Positives = 89/146 (60%)
Frame = +3
Query: 255 ELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSI 434
ELNA LF+ST++PV+K L DA + K++IH+IVLVGGSTRIPKVQ+L++DFF GKE ++ I
Sbjct: 1001 ELNAKLFKSTLKPVQKVLEDADLKKSEIHEIVLVGGSTRIPKVQQLVKDFFEGKEPSRGI 1060
Query: 435 YPDEXXXXXXXXXXXILHGDNSEEVKDXXXXXXXXXXXGIETAGSVMTTLHYSGNTNQSP 614
PDE +L G+ E+ + GIET G VMT L S NT P
Sbjct: 1061 NPDEAVAYGAAVQAGVLGGE--EDTGEVVLLDVNPLTLGIETVGGVMTKL-ISRNT-VIP 1116
Query: 615 T*NRLRHSTTYSDNPTRSTSSQVF*G 692
T + + +T +DN + + QVF G
Sbjct: 1117 T-KKSQVFSTAADN-QNTVTIQVFEG 1140
Score = 96.3 bits (229), Expect = 2e-20
Identities = 44/85 (51%), Positives = 61/85 (71%)
Frame = +1
Query: 1 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACETAKRTLSSST 180
V +T GDTHLGGEDFD ++ HF++ +K+K K++ + RA+++LR E AKR LS+
Sbjct: 916 VVATNGDTHLGGEDFDQNVMEHFIKLYKKKKGKNIRKDNRAVQKLRREVEKAKRALSTQH 975
Query: 181 QASIEIDSLFEGIDFYTSITRARFE 255
QA +EI+S FEG DF +TRARFE
Sbjct: 976 QARVEIESFFEGEDFSEMLTRARFE 1000
>SB_37014| Best HMM Match : HSP70 (HMM E-Value=5.9e-16)
Length = 212
Score = 78.6 bits (185), Expect = 5e-15
Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 228 HVNYSCS---LRELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 398
H+N S L ADL T+ P +K L+DA+++K +I D++LVGG TR+PKVQ+ +Q
Sbjct: 48 HLNMKLSRSKFESLVADLINRTVGPCKKCLQDAEINKGEIGDVLLVGGMTRMPKVQQTVQ 107
Query: 399 DFFNGKELNKSIYPDEXXXXXXXXXXXILHGDNSEEVKDXXXXXXXXXXXGIETAGSVMT 578
D F G+ +K++ PDE +L GD VKD GIET G V T
Sbjct: 108 DIF-GRVPSKAVNPDEAVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVFT 162
Query: 579 TL 584
L
Sbjct: 163 KL 164
>SB_38725| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 766
Score = 78.6 bits (185), Expect = 5e-15
Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 3/122 (2%)
Frame = +3
Query: 228 HVNYSCS---LRELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQ 398
H+N S L ADL T+ P +K L+DA+++K +I D++LVGG TR+PKVQ+ +Q
Sbjct: 103 HLNMKLSRSKFESLVADLINRTVGPCKKCLQDAEINKGEIGDVLLVGGMTRMPKVQQTVQ 162
Query: 399 DFFNGKELNKSIYPDEXXXXXXXXXXXILHGDNSEEVKDXXXXXXXXXXXGIETAGSVMT 578
D F G+ +K++ PDE +L GD VKD GIET G V T
Sbjct: 163 DIF-GRVPSKAVNPDEAVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVFT 217
Query: 579 TL 584
L
Sbjct: 218 KL 219
Score = 70.5 bits (165), Expect = 1e-12
Identities = 34/66 (51%), Positives = 45/66 (68%)
Frame = +1
Query: 1 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACETAKRTLSSST 180
VK+T GDT+LGGEDFDN ++ + EFK++ DL+ + AL+RLR A E AK LSSS
Sbjct: 26 VKATNGDTYLGGEDFDNTLLKFLIAEFKKESGVDLSKDSMALQRLREAAEKAKIELSSSV 85
Query: 181 QASIEI 198
Q I +
Sbjct: 86 QTDINL 91
>SB_51590| Best HMM Match : HSP70 (HMM E-Value=4.4e-36)
Length = 437
Score = 70.5 bits (165), Expect = 1e-12
Identities = 26/62 (41%), Positives = 48/62 (77%)
Frame = +3
Query: 258 LNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIY 437
+N DLF+ ++P+ + L + ++ K ++ ++VLVGGSTR+PK+++L+Q+FF+GK N +I
Sbjct: 338 INEDLFKKVLQPIRRVLAEVELPKEEVDEVVLVGGSTRVPKIRQLIQEFFDGKPPNVAID 397
Query: 438 PD 443
P+
Sbjct: 398 PE 399
Score = 46.8 bits (106), Expect = 2e-05
Identities = 28/87 (32%), Positives = 50/87 (57%), Gaps = 5/87 (5%)
Frame = +1
Query: 13 AGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACETAKRTLSSSTQASI 192
AG+ LGG+DF+ R + + +Q +++ + L T ++RLR E AK L+ + + +I
Sbjct: 252 AGNNRLGGQDFNARFMQYLLQLIHKRFNRQL-TCSEDIQRLRQEVEAAKINLTRTNEVTI 310
Query: 193 E--IDSLFEG---IDFYTSITRARFES 258
+ + SL EG + F +I+R FE+
Sbjct: 311 KLMLPSLSEGKKIVKFKETISRKMFET 337
>SB_15336| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1068
Score = 68.5 bits (160), Expect = 5e-12
Identities = 36/86 (41%), Positives = 53/86 (61%), Gaps = 1/86 (1%)
Frame = +1
Query: 1 VKSTAGDTHLGGEDFDNRMVNHFVQEFKRKYKKDLATNKRALRRLRTACETAKRTLSSST 180
V STA + +LGG DFD +V HF QEFK KYK D+ ++ +A +L CE K+ +S++T
Sbjct: 279 VLSTAVEPNLGGRDFDYVLVEHFAQEFKTKYKIDVHSSIKAKIKLGAECEKLKKLMSANT 338
Query: 181 -QASIEIDSLFEGIDFYTSITRARFE 255
+ I I+ E D + + RA+FE
Sbjct: 339 SEIPINIECFMEDKDVHGRMKRAQFE 364
>SB_47391| Best HMM Match : HSP70 (HMM E-Value=2.7e-07)
Length = 592
Score = 60.9 bits (141), Expect = 1e-09
Identities = 34/86 (39%), Positives = 50/86 (58%), Gaps = 5/86 (5%)
Frame = +1
Query: 1 VKSTAGDTHLGGEDFDNRMVNHFVQEFKR-----KYKKDLATNKRALRRLRTACETAKRT 165
V +T D LGG +FD +++ +FKR K+K D TNKR+ +L+T+ E K
Sbjct: 180 VLATEYDGALGGRNFDEVLLDLLANDFKRQVLLWKWKIDPLTNKRSKTKLQTSAEQCKNI 239
Query: 166 LSSSTQASIEIDSLFEGIDFYTSITR 243
LS+ A+ +DSL EGIDF ++R
Sbjct: 240 LSTLESANCSVDSLCEGIDFQGQVSR 265
>SB_31398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1019
Score = 53.6 bits (123), Expect = 2e-07
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 VKSTAGDTHLGGEDFDNRMVNHFVQEFKR--KYKKDLATNKRALRRLRTACETAKRTLSS 174
+K D LGG D R+ +H VQ FK+ K+K ++ + RA+ + K+ LS+
Sbjct: 201 IKGIGFDRTLGGHAIDMRLRDHLVQLFKKNYKFKGEVTQSSRAMAKFYKEALRVKQVLSA 260
Query: 175 STQASIEIDSLFEGIDFYTSITRARFE 255
+ + +I+ +F+G DF +TR E
Sbjct: 261 NNEIFAQIEGVFDGKDFRVKVTREELE 287
Score = 51.2 bits (117), Expect = 8e-07
Identities = 28/66 (42%), Positives = 35/66 (53%)
Frame = +3
Query: 249 LRELNADLFRSTMEPVEKSLRDAKMDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNK 428
L E+ DLF PV ++L+ A M I +VLVGG R+PKVQ L EL K
Sbjct: 286 LEEMCQDLFDRVAGPVNRALKSASMTMNDIDSVVLVGGGIRVPKVQDALLRAVKKPELAK 345
Query: 429 SIYPDE 446
+I DE
Sbjct: 346 NINADE 351
>SB_47390| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 168
Score = 48.8 bits (111), Expect = 4e-06
Identities = 22/57 (38%), Positives = 36/57 (63%)
Frame = +3
Query: 321 MDKAQIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIYPDEXXXXXXXXXXXILHG 491
+ ++ + ++LVGG+TR PK+Q+LL+++F GKE+ + I PDE IL G
Sbjct: 35 LKQSSMIQVILVGGATRTPKIQQLLKNYFVGKEICRRISPDEVVAYGAAVQASILMG 91
>SB_24074| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 87
Score = 35.5 bits (78), Expect = 0.043
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 333 QIHDIVLVGGSTRIPKVQKLLQDFFNGKELNKSIYPDE 446
+I + +VGGSTRIP ++ ++++ F GKEL ++ DE
Sbjct: 6 EIDSVEIVGGSTRIPAIKDIIKNVF-GKELMTTMNADE 42
>SB_17020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 957
Score = 30.7 bits (66), Expect = 1.2
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = -1
Query: 554 NTEGKGCYIKQQQILDLL--RVVTVQDSSLDSCTISYGLVRVYRFVELLSIKEILQELLH 381
+ EG G ++Q ++ L ++ VQ +S D C +YG+V + L S +E L+ LH
Sbjct: 463 HVEGAGFRERKQVLVTSLLSAILAVQVASFD-CAKNYGVVSWLNCLALQSGRESLETTLH 521
Query: 380 LGDTSGATHQ 351
L T T Q
Sbjct: 522 LLQTMWETMQ 531
>SB_29289| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 956
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 66 LCPGVQEEIQKGPRYQQESS*AFAYCM*DGK 158
LCP ++ + GP +++E AFA C+ GK
Sbjct: 169 LCPSPEQNGEPGPMFEREGGDAFANCVARGK 199
>SB_41892| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 382
Score = 29.9 bits (64), Expect = 2.2
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +3
Query: 57 GQPLCPGVQEEIQKGPRYQQESS*AFAYCM 146
G LCP ++ + GP +++E S AFA C+
Sbjct: 218 GYKLCPLPEQNGEPGPMFEREGSDAFANCV 247
>SB_19421| Best HMM Match : Ribosomal_L36 (HMM E-Value=0.85)
Length = 647
Score = 29.5 bits (63), Expect = 2.8
Identities = 19/40 (47%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Frame = +2
Query: 8 PPPATPTWEVRTL-TIAWSTTLSRSSRGNTKRTSLPTREL 124
PPPA T E L T +W+ T S + R KRT LPT L
Sbjct: 436 PPPAFQTDEPERLQTSSWTETASGTGREEFKRT-LPTAAL 474
>SB_47578| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 744
Score = 29.1 bits (62), Expect = 3.8
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Frame = -1
Query: 560 SLNTEGKGCYIKQQQILDLLRVVTVQDSSLDSCTISYGLVR------VYRFVELLSIKE 402
SL +E +GCY K +LD + T + S SC +G +R +Y F + L +E
Sbjct: 413 SLVSEARGCYSKLDPVLDKISHATNRVQS--SCQACFGAIREAKERCLYEFCKQLDARE 469
>SB_28120| Best HMM Match : ScdA_N (HMM E-Value=6.5)
Length = 452
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 66 LCPGVQEEIQKGPRYQQESS*AFAYCM*DGK 158
LCP ++ GP +++E S AFA C+ GK
Sbjct: 206 LCPLPEQNGGPGPMFEREGSDAFANCVTRGK 236
>SB_38784| Best HMM Match : Apo-VLDL-II (HMM E-Value=8.3)
Length = 439
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 66 LCPGVQEEIQKGPRYQQESS*AFAYCM 146
LCP ++ + GP +++E S AFA C+
Sbjct: 107 LCPLPEQNGEPGPMFEREGSDAFANCV 133
>SB_55740| Best HMM Match : C1_1 (HMM E-Value=3.6)
Length = 533
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +3
Query: 66 LCPGVQEEIQKGPRYQQESS*AFAYCM 146
LCP ++ + GP +++E S AFA C+
Sbjct: 74 LCPLPEQNGEPGPMFEREGSDAFANCV 100
>SB_56121| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 553
Score = 27.9 bits (59), Expect = 8.7
Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Frame = +1
Query: 244 ARFES*TPICSGLPW--SQWRSLSVMPRWIRL--KSTILY--WWVAPLVSPRCRSSCKIS 405
AR S P+ S P ++R L ++PRW + KST+L+ V P S R RS ++
Sbjct: 218 ARVRSSPPVASLDPGVRQEYRPLHMLPRWTLVYGKSTVLFTSCLVGPWCSARVRSPPPVA 277
Query: 406 LME 414
++
Sbjct: 278 SLD 280
>SB_4931| Best HMM Match : Tctex-1 (HMM E-Value=1.7e-09)
Length = 259
Score = 27.9 bits (59), Expect = 8.7
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +1
Query: 391 SCKISLMERSSTNLYTL-TRP*LMVQLSRLLSCTVTTLRRSRIC 519
S +++++ER +++ Y + +RP LM + T TT+ + +C
Sbjct: 99 SSRLAMLEREASDYYVMMSRPFLMTPVKSFQKPTATTVMQRALC 142
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,984,925
Number of Sequences: 59808
Number of extensions: 517621
Number of successful extensions: 3821
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 3662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3813
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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