Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30120
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1...    29   0.64 
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    28   1.5  
SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3 |Schi...    27   2.0  
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces...    27   2.6  
SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dp...    27   3.4  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    26   4.5  
SPAC17C9.02c |lys7||alpha-aminoadipate reductase phosphopantethe...    26   4.5  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    26   4.5  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   6.0  
SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster...    26   6.0  
SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces ...    26   6.0  
SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|c...    26   6.0  
SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   7.9  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    25   7.9  

>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 881

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -1

Query: 134 ARTAF*GSTFAVSRQNDKTDCNQTPHFTQSS 42
           AR  F   +F V+  N   DCN TPH   +S
Sbjct: 289 ARLNFLSFSFCVNPMNQSLDCNTTPHRRNAS 319


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +1

Query: 484 QRMRSGIVGSNQCNSCRCNADGYGICSDEACTEHIIEPKKECAPKTMWKNECNTC 648
           +  +S + GSN  NSC C  D   + S+      I+  +  C+   M K    TC
Sbjct: 105 ENRKSSLYGSNGINSCGC-VDISNVGSESGTKHQIVVGESNCSAYGM-KENIYTC 157


>SPBC11C11.11c ||SPBC3B8.12|ATP-dependent DNA helicase Irc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 606

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +2

Query: 416 LGLCSLDACRRSSTPKKFELIQGRECAPGSSGRTSVTV 529
           L L +L  CR S   K  E+  G +CA G +  T  +V
Sbjct: 89  LALQALKHCRESLPNKSIEIDMGNQCASGLADVTVASV 126


>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 179

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/42 (28%), Positives = 15/42 (35%)
 Frame = +2

Query: 200 RVCRPRNAVGSGMPGGNRGESNCHFCRCSDSGVAECLRQDSC 325
           R CR       G  GG+R   NC+ C        +C     C
Sbjct: 96  RDCRTNGQQSGGRFGGHRSNMNCYACGSYGHQARDCTMGVKC 137


>SPBP8B7.14c |dpb2||DNA polymerase epsilon catalytic subunit b Dpb2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 594

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = +1

Query: 106 KVEP*NAVLAQKAHVQQSK-NQKTNRVR*QQMTRLPSKKCSRKWNAWREP 252
           +V+P NA+     HV   K +   NR   Q++    SKKC  +W +  EP
Sbjct: 19  EVQP-NALRPVAFHVFTRKYDLNINRDSLQELASFVSKKCGSQWRSQCEP 67


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 586 CVQCRLRHYKCRIHRHCTYNCY 521
           C+ CR R  KC  +R C +NC+
Sbjct: 26  CLYCRRRKIKCDKNRPC-HNCF 46


>SPAC17C9.02c |lys7||alpha-aminoadipate reductase
           phosphopantetheinyl transferase Lys7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +3

Query: 54  EMRCLIAICFIVLARHCESGALKCSP 131
           +M   +A+  I++ RH  S AL+CSP
Sbjct: 43  DMDAKMALASILIKRHLVSTALECSP 68


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 15/65 (23%), Positives = 28/65 (43%)
 Frame = +1

Query: 490 MRSGIVGSNQCNSCRCNADGYGICSDEACTEHIIEPKKECAPKTMWKNECNTCWCTSDWV 669
           + SGI+ +   ++ + N+D + +C   A  +  +E K    P          CW  +   
Sbjct: 521 LSSGILENAALSATQNNSDSFAVCLACAMIQRSLERKNMSTPSQCSSCFEQYCWNGTTVN 580

Query: 670 NPCAL 684
           NP A+
Sbjct: 581 NPSAV 585


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1516

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +2

Query: 536 AMPMDTAFVVTKPALNTLSSQRKNVRRRRCGKMNATRVGALR 661
           A P DT  + TKP  NTL S  K+        +N T    +R
Sbjct: 622 APPADTKKIKTKPKSNTLGSMFKSSLVSLMSTINETNAHYIR 663


>SPBC15D4.02 |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 419

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -2

Query: 586 CVQCRLRHYKCRIHRHCTYNC 524
           C+ CR R  KC   +   YNC
Sbjct: 46  CLTCRKRRIKCDERKPICYNC 66


>SPBC582.05c |brc1||BRCT domain protein Brc1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 878

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 574 CTEHIIEPKKECAPKTMWKNECNTCWCTSDWVNPC 678
           CT H+I P+     K +       C  T DW+N C
Sbjct: 697 CT-HLIAPRILRTSKFLCSIPYGPCVVTMDWINSC 730


>SPAC57A10.04 |mug10||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +2

Query: 362 PGTSFQRDCNTCVCLDNGL 418
           P TSF  D N CV  D+GL
Sbjct: 236 PATSFIYDFNACVFCDDGL 254


>SPAC11D3.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 546

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +2

Query: 77  LFYRFGATLRKWS 115
           +FYRFG ++R WS
Sbjct: 528 IFYRFGKSIRAWS 540


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -3

Query: 321 LSCLKHSATPESEHLQKWQLLSPRFP 244
           LS L+  A+  + H+  WQLLSP +P
Sbjct: 679 LSALQQIAS--TRHISVWQLLSPYWP 702


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,198,088
Number of Sequences: 5004
Number of extensions: 69840
Number of successful extensions: 245
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)