Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30120
(698 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0896 + 22373348-22374946 33 0.29
12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775 32 0.38
01_05_0463 + 22461169-22461216,22463153-22463248,22463334-224634... 32 0.38
09_04_0146 - 15080906-15081322,15081556-15081697,15081804-150818... 30 1.5
06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796 30 2.0
11_06_0345 + 22544825-22544921,22545751-22545773,22546604-225466... 29 3.5
05_01_0445 + 3547176-3547577,3548625-3549557,3550246-3550524,355... 29 3.5
12_01_0642 + 5414964-5415410,5415535-5416677 29 4.7
10_01_0161 + 1817783-1818862 29 4.7
08_01_0706 - 6235817-6235988,6236028-6236338,6236421-6236627,623... 29 4.7
03_06_0591 + 34936583-34936674,34937631-34937640,34937716-349378... 29 4.7
04_04_1229 - 31906854-31907300,31907986-31908181,31908631-319087... 28 6.2
03_05_1104 + 30431833-30432143,30432789-30432862,30432949-304330... 28 6.2
09_03_0091 + 12302078-12302395,12303789-12304543,12304755-12305232 28 8.2
08_02_0702 - 20179838-20180040,20180397-20180464,20180642-201809... 28 8.2
07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484 28 8.2
>07_03_0896 + 22373348-22374946
Length = 532
Score = 32.7 bits (71), Expect = 0.29
Identities = 34/114 (29%), Positives = 53/114 (46%), Gaps = 4/114 (3%)
Frame = +3
Query: 99 HCESGA-LKCSPGTEGPCAAEQE--SKDKPSQITTDDASAVQEMQSEVECLAGTEGRATA 269
HC +GA CSPG PCA + D+P++ + A++ + L + A
Sbjct: 70 HCTAGADPSCSPGAASPCALPPGAWAWDRPAETSVVSEWALKCAGPALVSLPASSFFAGC 129
Query: 270 TSAGALIQE-SPSA*GRTAVIKLYLLNLCVVSQAPPSRGIVTLASA*ITVWAYA 428
+ G L+ + S GR K+ L++L +S A G++T S VWAYA
Sbjct: 130 LAGGFLLTTLADSLLGRR---KMLLVSLASMSVA----GVLTAFSP--NVWAYA 174
>12_02_0669 + 21695391-21697443,21698319-21699030,21699169-21699775
Length = 1123
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/59 (30%), Positives = 28/59 (47%)
Frame = +3
Query: 138 EGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEGRATATSAGALIQESPSA*G 314
E P A ES+DK ++ +A E ++V ATAT + AL+++ A G
Sbjct: 642 EVPVTASSESEDKEPAAVPEEVAASSEKTADVAVAGAEASTATATISPALVKQLREATG 700
>01_05_0463 +
22461169-22461216,22463153-22463248,22463334-22463446,
22463479-22463494,22463939-22464031,22464118-22464261,
22464508-22464596,22464687-22464792,22464874-22464961,
22465585-22465703,22465788-22465952,22466235-22466404,
22466488-22466597,22466682-22466791,22466886-22466996,
22467082-22467183,22467266-22467471,22467563-22467881,
22467983-22468093
Length = 771
Score = 32.3 bits (70), Expect = 0.38
Identities = 23/87 (26%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Frame = +2
Query: 95 ATLRKWSPKMQSWHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGMPGGNRG---ESN 265
A + +W P M++WH + +A++ Q DN + ++ + A G P G+ G E
Sbjct: 669 ADVSEWQPSMKNWHTKDY-EKAKVHLQ--CDNGQ-KITEIKFA-SFGTPQGSCGSYTEGG 723
Query: 266 CHFCRCSDSGVAECLRQDSCDQIIFTE 346
CH + D C+ Q+ C + E
Sbjct: 724 CHAHKSYDIFWKNCVGQERCGVSVVPE 750
>09_04_0146 -
15080906-15081322,15081556-15081697,15081804-15081887,
15081982-15082039,15084038-15084572
Length = 411
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +3
Query: 123 CSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEGRATATS 275
CS TE P AA + D S+ D V + VEC++ RA AT+
Sbjct: 357 CSSSTEAPAAAAMDGADNHSKSMVKD-QEVNMICGLVECVSLEPSRARATT 406
>06_01_0522 + 3787054-3788004,3788094-3788422,3788640-3788796
Length = 478
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 90 LARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQ 215
+A E +K P +GP A S+ K ++ DDA AV+
Sbjct: 200 MAAAAEEVDVKSEPDLDGPACAPSSSRKKKRKMVDDDAIAVE 241
>11_06_0345 +
22544825-22544921,22545751-22545773,22546604-22546690,
22546809-22546885,22547357-22547510
Length = 145
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/52 (30%), Positives = 24/52 (46%)
Frame = +2
Query: 113 SPKMQSWHRRPMCSRARIKRQTESDNNR*RVCRPRNAVGSGMPGGNRGESNC 268
SP SW RR + A++KR E ++R + +G G N +NC
Sbjct: 6 SPPTASWSRRCRPATAQVKRIAEDPDDRSLDKSAKVVIGGGQDAMNVTMTNC 57
>05_01_0445 +
3547176-3547577,3548625-3549557,3550246-3550524,
3550624-3550752,3550813-3550869
Length = 599
Score = 29.1 bits (62), Expect = 3.5
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = -3
Query: 438 ASKEHRPRPLSKQTQVLQSLWKEVPG 361
+S + PR + +++Q++WKEVPG
Sbjct: 355 SSLDWGPRACHRTHEIIQAMWKEVPG 380
>12_01_0642 + 5414964-5415410,5415535-5416677
Length = 529
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 1/59 (1%)
Frame = +3
Query: 117 LKCSPGTEGPC-AAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEGRATATSAGALI 290
L+C PG C +D PS +TT A + VE +A ++ G L+
Sbjct: 32 LRCVPGGAAACPVCATPWRDAPSPLTTSSIPAAYDDDDPVEPVATAARNSSGGGGGVLV 90
>10_01_0161 + 1817783-1818862
Length = 359
Score = 28.7 bits (61), Expect = 4.7
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 307 ALGDS*IRAPAEVAVALPSVPARHSTSDCISWTADASSV 191
A D+ IR P +V S+P R++ + W DA++V
Sbjct: 46 AADDNSIRLPRKVGRTASSLPLRYAAPQLLHWPDDAAAV 84
>08_01_0706 -
6235817-6235988,6236028-6236338,6236421-6236627,
6236718-6236889,6236994-6237249,6238015-6238073,
6238693-6238782,6238869-6239013,6239598-6239712,
6240690-6240701
Length = 512
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 609 TFFLWLDNVFSAGFVTTNAVSIGIAPTTVTLVRPDDPGAHSL 484
TF+ +VF+ GFV N I +AP + RP D GA ++
Sbjct: 262 TFYSGSVSVFATGFVAKNISFINVAP----IPRPGDVGAQAV 299
>03_06_0591 +
34936583-34936674,34937631-34937640,34937716-34937831,
34938249-34938261,34939924-34939977,34940020-34940170,
34940619-34940647
Length = 154
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Frame = -2
Query: 661 PKCTNTCCIHFSTS-SSAHILSLAR*CVQC---RLRHYK 557
P+C N+C + FS S H + L R C LR+YK
Sbjct: 27 PRCLNSCTVRFSLSWLGVHSMLLMRYCTNVMDHNLRYYK 65
>04_04_1229 -
31906854-31907300,31907986-31908181,31908631-31908756,
31909962-31910329,31910680-31910835,31910968-31911168,
31911230-31911375,31911439-31911865,31912527-31912627,
31913197-31913254
Length = 741
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 104 RKWSPKMQSWHRRPMCSRARIKRQTESDNNR 196
R+ S K W+R +R R+K T SD R
Sbjct: 577 RRRSTKFDRWNRTLQAARRRVKEDTMSDTGR 607
>03_05_1104 +
30431833-30432143,30432789-30432862,30432949-30433067,
30434462-30434526,30434962-30435310
Length = 305
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +2
Query: 461 KKFELIQGRECAPGSSGRTSVTVVGAMPMDTAFVVTKPALNTLSSQR 601
KK E + APG GR + A P D+A+ V K T +R
Sbjct: 173 KKVEPMVKDAAAPGKGGRLKMESSNAQPQDSAYSVPKNPSMTCCRKR 219
>09_03_0091 + 12302078-12302395,12303789-12304543,12304755-12305232
Length = 516
Score = 27.9 bits (59), Expect = 8.2
Identities = 29/92 (31%), Positives = 43/92 (46%), Gaps = 10/92 (10%)
Frame = -3
Query: 615 RRTFFLWLDNVFSAGFVTTNAVSIGIAPTTVTLVRPDDPGAHSLPWISSNFLGVDDLLQA 436
R + F WL S GF++ V + +A TTV + H L I S F+G+ + A
Sbjct: 138 RGSAFGWLQLASSLGFISGGFVGLLLAQTTVFGIAGWRIAFH-LVAIISVFVGILNWFFA 196
Query: 435 SKEHRP--------RPLSKQT--QVLQSLWKE 370
H P RP+ KQ+ QV++ + KE
Sbjct: 197 VDPHFPAGNVGSCDRPVCKQSVWQVIEEMIKE 228
>08_02_0702 -
20179838-20180040,20180397-20180464,20180642-20180970,
20181058-20181258,20181369-20181501,20181576-20181619,
20181694-20181753,20181872-20181931,20182840-20182921,
20183292-20183368,20183649-20183726,20183997-20184143,
20184189-20184254,20184376-20184417,20184513-20184992
Length = 689
Score = 27.9 bits (59), Expect = 8.2
Identities = 12/41 (29%), Positives = 20/41 (48%)
Frame = +2
Query: 344 EPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKK 466
EP G F+ +TC+ G+GL + A + S P++
Sbjct: 42 EPASASGGGGFRGRISTCLRKSRGMGLLGMVASKSPSPPRR 82
>07_03_0088 + 13270463-13270745,13271113-13271584,13271680-13272484
Length = 519
Score = 27.9 bits (59), Expect = 8.2
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -2
Query: 250 VPARHSTSDCISWTADASSVVI*LGLSFDSCSAAHGPSVPGLHFRAPLSQCR 95
+ RH+ D + D LGL ++C+ HG S P L + +C+
Sbjct: 277 IKTRHANKDVAGYGNDL------LGLMLEACAPEHGESCPQLSMDEIIDECK 322
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,758,349
Number of Sequences: 37544
Number of extensions: 546979
Number of successful extensions: 1716
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1714
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -