Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30120
         (698 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)                   33   0.22 
SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14)                33   0.29 
SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)                     31   0.90 
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.90 
SB_37783| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)        31   1.2  
SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)                        31   1.2  
SB_16910| Best HMM Match : EGF (HMM E-Value=0)                         30   2.1  
SB_54574| Best HMM Match : WD40 (HMM E-Value=0)                        30   2.1  
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.1  
SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)                     29   2.7  
SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06)                   29   4.8  
SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)                     28   6.3  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_17940| Best HMM Match : Laminin_EGF (HMM E-Value=0.077)             28   8.4  
SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_25762| Best HMM Match : VWD (HMM E-Value=2.2e-16)
          Length = 705

 Score = 33.1 bits (72), Expect = 0.22
 Identities = 16/55 (29%), Positives = 25/55 (45%)
 Frame = +2

Query: 278 RCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNTCVCLDNGLGLCSLDAC 442
           R +  G  +C+++  C  I   +  +  PG    +DC  CVC D  L  C+   C
Sbjct: 224 RVNAVGKVQCIKRKECPCIHDAKIYK--PGDKVYKDCQLCVCKDGQLTNCTGQKC 276


>SB_16758| Best HMM Match : EGF_CA (HMM E-Value=5.5e-14)
          Length = 338

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 28/91 (30%), Positives = 38/91 (41%), Gaps = 5/91 (5%)
 Frame = +2

Query: 266 CHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPG-TSFQRDCNTCVCLDNGLGLCSLDAC 442
           CH   CS SG+  C +  SC   I +    C+PG T    +C  C  +    G  S  A 
Sbjct: 215 CHIDECS-SGINNCHQDASCANTIGSFACTCKPGYTGDGINCADC-AMGMESGAISDSAI 272

Query: 443 RRSSTPKKFELIQGR----ECAPGSSGRTSV 523
             SS  +K     GR       PG++ R +V
Sbjct: 273 TASSYLEKLRPSNGRLNDPSVFPGNTDRNTV 303


>SB_35516| Best HMM Match : Kazal_1 (HMM E-Value=0)
          Length = 320

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +2

Query: 302 EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGLCSLDACRRSSTP 460
           EC +RQD+C    +T P+ C P ++F  D    +TC   D+      ++ C ++  P
Sbjct: 44  ECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTCVCVEPCPKTLKP 100


>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3261

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 4/57 (7%)
 Frame = +2

Query: 302  EC-LRQDSCDQIIFTEPVRCQPGTSFQRDC---NTCVCLDNGLGLCSLDACRRSSTP 460
            EC +RQD+C    +T P+ C P ++F  D    +TC   D+      ++ C ++  P
Sbjct: 1018 ECQMRQDACFNKQWTTPISCDPCSNFTCDSPPYSTCKAQDDQPTCVCVEPCPKTLKP 1074


>SB_37783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +3

Query: 120 KCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEGRATATSAGALIQES 299
           KC+ G E   A + ES      +  D A+A  + + E   LA   G+A        +Q S
Sbjct: 141 KCAAGKESETAGQLESVKHQLSMQRDQATAALKERDEFAQLAVDRGKALKEKQQENVQLS 200

Query: 300 PS 305
           PS
Sbjct: 201 PS 202


>SB_29898| Best HMM Match : Chromadorea_ALT (HMM E-Value=0.0085)
          Length = 350

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 577 CRLRHYKCRIHRHCT--YNCYTGSTRRSRSAF 488
           C++++Y CR  R C   Y  Y G  RR R  +
Sbjct: 128 CKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCY 159


>SB_8898| Best HMM Match : WSC (HMM E-Value=6.4)
          Length = 165

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 577 CRLRHYKCRIHRHCT--YNCYTGSTRRSRSAF 488
           C++++Y CR  R C   Y  Y G  RR R  +
Sbjct: 65  CKVKYYHCRYRRRCVWRYKYYHGKPRRYRHCY 96


>SB_16910| Best HMM Match : EGF (HMM E-Value=0)
          Length = 1552

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)
 Frame = +2

Query: 368  TSFQRDCNTCVCLDNGLG----LCSLDACRRSSTPKKFELIQGRECAP 499
            T+ + DCNTC C+         +C  D C  SST        G  C P
Sbjct: 1195 TTVKEDCNTCSCVHGTRTCTKVVCGPDNCLNSSTVSNDICSMGSVCVP 1242


>SB_54574| Best HMM Match : WD40 (HMM E-Value=0)
          Length = 1050

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -1

Query: 689 HLSAHGFTQSEVHQHVLHSFFHIVF-GAHSFFGSIMCSVQASSLQMPYPSALHLQLL 522
           ++S     ++E    VL +F H V   AH F   +M  +   +LQ P  S +H Q +
Sbjct: 418 YISVRDSIKAEQELEVLDNFHHFVSTNAHLFVAKMMPDIVQLALQQPSLSQVHTQAM 474


>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 23/87 (26%), Positives = 30/87 (34%)
 Frame = +2

Query: 170 RQTESDNNR*RVCRPRNAVGSGMPGGNRGESNCHFCRCSDSGVAECLRQDSCDQIIFTEP 349
           R   S N R   C   +   S     N   + C   R + S  +      S       EP
Sbjct: 213 RSNTSANTRANTCSNTSTYTSTNTRANTSSNTCADTRSNTSTSSYTGTNTSASYCRTPEP 272

Query: 350 VRCQPGTSFQRDCNTCVCLDNGLGLCS 430
            RC P  +F  D   C  + NGL + S
Sbjct: 273 -RCPPLVNFSLDLPECFAIRNGLQVVS 298


>SB_38457| Best HMM Match : zf-C2H2 (HMM E-Value=0)
          Length = 4303

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/51 (31%), Positives = 21/51 (41%)
 Frame = +1

Query: 517  QCNSCRCNADGYGICSDEACTEHIIEPKKECAPKTMWKNECNTCWCTSDWV 669
            QC  CR     +G  S    T H   P K C       N C   +CT+++V
Sbjct: 2340 QCTRCRSRFASFGEMSKHMRTLHNTRPSKTC-------NLCQKTFCTAEYV 2383


>SB_36847| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 344

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = +2

Query: 365 GTSFQRDCNTCVCLDNGLGLCSLDACRRSSTPKKFELI-QGRE 490
           G     DCN+CVC   G  +C+   C  SS   K  L+ QG +
Sbjct: 256 GAEIPTDCNSCVCA-CGRWVCTALDCNPSSNHVKASLVLQGEQ 297


>SB_58762| Best HMM Match : VWC (HMM E-Value=2.8e-06)
          Length = 218

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
 Frame = +1

Query: 520 CNSCRCNADGYGICS---------DEACTEHIIEPKKECAP 615
           C  C CN+     CS         D AC ++++EP K+C P
Sbjct: 104 CQKCECNSGKASSCSIGYHCDALLDGACEKYVLEP-KQCCP 143


>SB_32452| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 680

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = -1

Query: 635 SFFHIVFGAHSFFGSIMCSVQASSLQMPYPSALHLQLLHWFD 510
           SF H+ F  HS   S M  V  S L++      H   LHW D
Sbjct: 235 SFMHLAFLHHSMLSSDMTMVLPSHLEV--TQGCHHTTLHWDD 274


>SB_59712| Best HMM Match : SAP (HMM E-Value=3e-13)
          Length = 1072

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 19/72 (26%), Positives = 32/72 (44%)
 Frame = +3

Query: 93  ARHCESGALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEGRATAT 272
           A+H   G  K  P  E P  A Q  + KP ++  D +SA   +Q+  +     +    ++
Sbjct: 393 AQHLHPGHNKTLPMQEDPAIATQPVQPKPQEV--DSSSAGSSVQTSNDSSPAPQEDDKSS 450

Query: 273 SAGALIQESPSA 308
           SA    +  PS+
Sbjct: 451 SATEEYKSEPSS 462


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/54 (29%), Positives = 24/54 (44%)
 Frame = +2

Query: 236 MPGGNRGESNCHFCRCSDSGVAECLRQDSCDQIIFTEPVRCQPGTSFQRDCNTC 397
           MPG   G  +C  C C+ +G       D+CD    +    C+P     + C+TC
Sbjct: 858 MPGSYGGPGSCKPCNCNMAGSL----SDTCDD---SGKCNCKPNVQGDK-CDTC 903


>SB_17940| Best HMM Match : Laminin_EGF (HMM E-Value=0.077)
          Length = 816

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/51 (35%), Positives = 28/51 (54%)
 Frame = +3

Query: 114 ALKCSPGTEGPCAAEQESKDKPSQITTDDASAVQEMQSEVECLAGTEGRAT 266
           +LK +PG E    A    K+KP +    D ++++E QSEV  +A T  + T
Sbjct: 510 SLKETPG-EDRAIAIISLKEKPGKYRAIDITSLKETQSEVRNIAITSMKET 559


>SB_34910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2147

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 5/101 (4%)
 Frame = +3

Query: 108  SGALKCSPGTEGPCAAEQESKDKPSQIT-----TDDASAVQEMQSEVECLAGTEGRATAT 272
            + A + SP ++   A ++    + + +T     T   SA QE +S        E R++  
Sbjct: 1253 TSATQESPSSQVTSATQESRYSQVTSVTQEPPSTQVTSATQESRSSQVTSVTQESRSSQV 1312

Query: 273  SAGALIQESPSA*GRTAVIKLYLLNLCVVSQAPPSRGIVTL 395
            ++    QESPS+   +A  +     +  V+Q PPS  + ++
Sbjct: 1313 TSAT--QESPSSQVTSATQESRYSQVTSVTQEPPSSQVTSV 1351


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,011,682
Number of Sequences: 59808
Number of extensions: 640629
Number of successful extensions: 2059
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1852
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2057
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)