Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30118
         (788 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       23   2.8  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   2.8  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    23   2.8  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    23   2.8  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    23   2.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   8.5  

>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 417 PGNKFITECKSRHKAPLFEPEDGSKTA*EKD 325
           PG  +  E KSR K P F+ +     + E+D
Sbjct: 406 PGCSYTGEQKSRRKGPAFKVDPTQVESEEED 436


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 344 LLPSSGSKSGALCRDLHSVMNLFPGMRVCIQI 439
           +L S G  SG+LC    +   +FP M V + +
Sbjct: 122 VLLSPGGYSGSLCDQGFAQQPMFPSMSVNVSM 153


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 344 KLPEKKIPSTAAKATILSPNVA 279
           K+P  + P+T++ + + SPN A
Sbjct: 213 KIPPAEFPTTSSSSALESPNPA 234


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 344 KLPEKKIPSTAAKATILSPNVA 279
           K+P  + P+T++ + + SPN A
Sbjct: 2   KIPPAEFPTTSSSSALESPNPA 23


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/22 (36%), Positives = 15/22 (68%)
 Frame = -1

Query: 344 KLPEKKIPSTAAKATILSPNVA 279
           K+P  + P+T++ + + SPN A
Sbjct: 2   KIPPAEFPTTSSSSALESPNPA 23


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 654 WCCNAFLQLDQQVIYLQQT 598
           WC  +F  L +   ++QQT
Sbjct: 483 WCGQSFRSLAEMTSHMQQT 501


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 194,028
Number of Sequences: 336
Number of extensions: 4530
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21376414
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)