Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30118
         (788 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...   177   2e-45
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    29   1.0  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    28   1.8  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.8  
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar...    27   3.1  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   5.4  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   9.4  

>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score =  177 bits (430), Expect = 2e-45
 Identities = 112/249 (44%), Positives = 136/249 (54%), Gaps = 3/249 (1%)
 Frame = +3

Query: 3   FIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIR 182
           FI  VLA+FAASDGIVNENL+ERFS EVQ+ EARC YGFQI +EN+HSE YSLL+DTYIR
Sbjct: 123 FISTVLAYFAASDGIVNENLLERFSSEVQIPEARCVYGFQIMIENIHSETYSLLLDTYIR 182

Query: 183 DPK---REIFCLMRLRLFPV*RRKQIGSTVDCKQDCNIW*KDCCLCSCRRNLFLRQFCFH 353
           +PK   R    ++ +       +  +    D  +D     +     +     F   F   
Sbjct: 183 EPKEKQRHFDAILTMGSIKAKAKWALRWIND--EDSTYAIRLVAFAAVEGIFFSGSFASI 240

Query: 354 LLAQKAGPYAGTYIQ**TYFQG*GSAYRFCLSDVPTLSSKAN*GMCPAYYKSAVVIEQEF 533
              +K G   G         +  G    F       L  +    +  A    AV IE+E+
Sbjct: 241 FWLKKRGLMPGLTFSNELICRDEGLHTDFACLMFSHLKHRPGRKVVEAIIVEAVDIEKEY 300

Query: 534 LTDALPVRLLGMNCELMSQYIEFVADRLLVDLIGGKHYNTKNPFGLS*ILISAGKGKTNF 713
            TDALPV LLGMN +LM QYIEFVADRLLV L   K+YN  NPF     +  A  GKTNF
Sbjct: 301 FTDALPVSLLGMNKDLMCQYIEFVADRLLVALGNDKYYNVTNPFDFMENISLA--GKTNF 358

Query: 714 FEKKVGDYQ 740
           FEKKV DYQ
Sbjct: 359 FEKKVSDYQ 367



 Score =  107 bits (257), Expect = 2e-24
 Identities = 52/100 (52%), Positives = 65/100 (65%)
 Frame = +1

Query: 235 KEESRLGLQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELIS 414
           K +++  L+WI  + +T+  R+VAFAAVE            WLKKRGLMPGLTFSNELI 
Sbjct: 201 KAKAKWALRWINDEDSTYAIRLVAFAAVEGIFFSGSFASIFWLKKRGLMPGLTFSNELIC 260

Query: 415 RDEGLHTDFACLMFQHLVQKPTKECVLHIIKVQ*SLNKSF 534
           RDEGLHTDFACLMF HL  +P ++ V  II     + K +
Sbjct: 261 RDEGLHTDFACLMFSHLKHRPGRKVVEAIIVEAVDIEKEY 300


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -2

Query: 625 STSNLSATNSMY*DISSQFIPSSLTGSASVRNSCSMTTALL 503
           S+S  + T S Y + SS F+PSS+  SAS+ +S  + T+++
Sbjct: 211 SSSFTTTTGSPYYNTSS-FLPSSVISSASLSSSSVLPTSII 250


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 14/22 (63%), Positives = 16/22 (72%)
 Frame = -1

Query: 422 SSLEISSLLNVSPGIRPRFLSQ 357
           SS  I SLL VSPGI  +FLS+
Sbjct: 263 SSFLIPSLLGVSPGITVKFLSR 284


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 129 MENVHSEMYSLLIDTYIRDPKREIF 203
           + N H  +Y LL D Y++ P + IF
Sbjct: 61  LHNKHVSLYCLLSDRYLQPPSKRIF 85


>SPAC1B3.17 |clr2||chromatin silencing protein
           Clr2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 537

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = -1

Query: 320 STAAKATILSPNVAVLLAIHCRPNLLSSLHREESQPH*TENLSLRISDVGIY 165
           +T A   + +P   V+ A H RPN  SS    E QP  +  + L  S    Y
Sbjct: 81  NTNASTVVTAPEKNVVSARHVRPNPKSSKDTLEKQPKYSSQIYLTDSFENYY 132


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -2

Query: 727 TFFSKKFVLPFPADIRIHESPKGF 656
           TF S+K + P+    R+HESP  F
Sbjct: 415 TFLSRKSLPPYNGIHRLHESPSQF 438


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = +3

Query: 30  AASDGIVNENLVERFSQEVQ 89
           A +DGI+N+N++E   + VQ
Sbjct: 281 AVADGIMNDNVLESIGENVQ 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,410,032
Number of Sequences: 5004
Number of extensions: 72543
Number of successful extensions: 193
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)