Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30118
(788 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0189 + 1470006-1470989 181 5e-46
06_01_1045 - 8241862-8242881 180 1e-45
01_06_0920 - 33009183-33009335,33009421-33009741,33010221-330103... 31 1.0
06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053 29 3.2
04_01_0438 - 5723451-5723759,5723795-5723863,5724025-5724210,572... 29 3.2
04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608... 29 5.6
10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538 28 7.4
>06_01_0189 + 1470006-1470989
Length = 327
Score = 181 bits (441), Expect = 5e-46
Identities = 116/248 (46%), Positives = 138/248 (55%), Gaps = 1/248 (0%)
Frame = +3
Query: 3 FIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIR 182
F+ HVLAFFAASDGIV ENL RF +VQV EAR FYGFQIA+EN+HSEMYSLL++TYIR
Sbjct: 60 FVSHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 119
Query: 183 DPKREIFCLMRLRLFPV*RRKQIGSTVDCKQDCNIW*KDCCLCSCRRNLFLR-QFCFHLL 359
D + + P RRK + + + +C +F FC
Sbjct: 120 DDVEKDRLFRAIDTVPAVRRK-ADWAMRWIDGGERFAERLVAFACVEGIFFSGSFCAIFW 178
Query: 360 AQKAGPYAGTYIQ**TYFQG*GSAYRFCLSDVPTLSSKAN*GMCPAYYKSAVVIEQEFLT 539
+K G G + G F L K + AV IE+EF+
Sbjct: 179 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLDESRVQEIVADAVDIEREFVC 238
Query: 540 DALPVRLLGMNCELMSQYIEFVADRLLVDLIGGKHYNTKNPFGLS*ILISAGKGKTNFFE 719
DALPV L+GMN ELMSQYIEFVADRLL+ L K YN NPF LIS +GKTNFFE
Sbjct: 239 DALPVALVGMNGELMSQYIEFVADRLLMALGCKKMYNVANPFDWM-ELISL-QGKTNFFE 296
Query: 720 KKVGDYQK 743
K+VGDYQK
Sbjct: 297 KRVGDYQK 304
Score = 87.0 bits (206), Expect = 2e-17
Identities = 46/93 (49%), Positives = 55/93 (59%)
Frame = +1
Query: 256 LQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHT 435
++WI F ER+VAFA VE WLKKRGLMPGLTFSNELISRDEGLH
Sbjct: 145 MRWIDGGER-FAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHC 203
Query: 436 DFACLMFQHLVQKPTKECVLHIIKVQ*SLNKSF 534
DFACL++ L K + V I+ + + F
Sbjct: 204 DFACLLYDLLRGKLDESRVQEIVADAVDIEREF 236
Score = 34.7 bits (76), Expect = 0.085
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +2
Query: 191 ERDFLFNAVETLPCVKKKADW 253
E+D LF A++T+P V++KADW
Sbjct: 123 EKDRLFRAIDTVPAVRRKADW 143
>06_01_1045 - 8241862-8242881
Length = 339
Score = 180 bits (438), Expect = 1e-45
Identities = 116/248 (46%), Positives = 138/248 (55%), Gaps = 1/248 (0%)
Frame = +3
Query: 3 FIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIR 182
FI HVLAFFAASDGIV ENL RF +VQV EAR FYGFQIA+EN+HSEMYSLL++TYIR
Sbjct: 72 FISHVLAFFAASDGIVLENLASRFMSDVQVAEARAFYGFQIAIENIHSEMYSLLLETYIR 131
Query: 183 DPKREIFCLMRLRLFPV*RRKQIGSTVDCKQDCNIW*KDCCLCSCRRNLFLR-QFCFHLL 359
D + + P RRK + + + +C +F FC
Sbjct: 132 DGAEKDRLFRAIDTVPAVRRK-ADWAMRWIDGGERFAERLVAFACVEGIFFSGSFCAIFW 190
Query: 360 AQKAGPYAGTYIQ**TYFQG*GSAYRFCLSDVPTLSSKAN*GMCPAYYKSAVVIEQEFLT 539
+K G G + G F L K + AV IE+EF+
Sbjct: 191 LKKRGLMPGLTFSNELISRDEGLHCDFACLLYDLLRGKLDEARVREIVADAVDIEREFVC 250
Query: 540 DALPVRLLGMNCELMSQYIEFVADRLLVDLIGGKHYNTKNPFGLS*ILISAGKGKTNFFE 719
DALPV L+GMN +LMSQYIEFVADRLL+ L K YN NPF LIS +GKTNFFE
Sbjct: 251 DALPVALVGMNGDLMSQYIEFVADRLLMALGCKKMYNVANPFDWM-ELISL-QGKTNFFE 308
Query: 720 KKVGDYQK 743
K+VGDYQK
Sbjct: 309 KRVGDYQK 316
Score = 86.6 bits (205), Expect = 2e-17
Identities = 46/93 (49%), Positives = 55/93 (59%)
Frame = +1
Query: 256 LQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISRDEGLHT 435
++WI F ER+VAFA VE WLKKRGLMPGLTFSNELISRDEGLH
Sbjct: 157 MRWIDGGER-FAERLVAFACVEGIFFSGSFCAIFWLKKRGLMPGLTFSNELISRDEGLHC 215
Query: 436 DFACLMFQHLVQKPTKECVLHIIKVQ*SLNKSF 534
DFACL++ L K + V I+ + + F
Sbjct: 216 DFACLLYDLLRGKLDEARVREIVADAVDIEREF 248
Score = 34.7 bits (76), Expect = 0.085
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +2
Query: 191 ERDFLFNAVETLPCVKKKADW 253
E+D LF A++T+P V++KADW
Sbjct: 135 EKDRLFRAIDTVPAVRRKADW 155
>01_06_0920 -
33009183-33009335,33009421-33009741,33010221-33010343,
33010476-33010634,33010720-33011086,33011162-33011315,
33011782-33012874
Length = 789
Score = 31.1 bits (67), Expect = 1.0
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 270 KQDCNIW*KDCCLCSCRRNLFLRQFCFHLLAQKA 371
KQ+C + D C CSC + L + C H++A A
Sbjct: 214 KQECVLKADDTCHCSCAKPKLLHRPCTHVIAAAA 247
>06_01_0418 - 2979418-2981404,2984505-2986469,2987164-2988053
Length = 1613
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Frame = -1
Query: 467 TKCWNIRQAKSVCRPSSLEISSLLNVSPGIRPRFLSQKMEAKLPE------KKIPSTAAK 306
++C + + +CR L+ SL N S I PR + + + KK+PS+AA
Sbjct: 1266 SRCMSNKNLDCICRFFQLKYLSLRNTSVSILPRLIGNLNHLETLDIRETLIKKLPSSAAN 1325
Query: 305 ATIL 294
T L
Sbjct: 1326 LTCL 1329
>04_01_0438 -
5723451-5723759,5723795-5723863,5724025-5724210,
5724297-5724558,5724662-5724960,5725040-5725453,
5725533-5725899,5726002-5726146,5726562-5727558
Length = 1015
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +3
Query: 270 KQDCNIW*KDCCLCSCRRNLFLRQFCFHLL--AQKAGPYAGTYI 395
KQ+C + C CSCR+ L + C H++ A + G Y+
Sbjct: 195 KQECVLKDDGTCHCSCRKPTLLHRPCTHVISAASECGIQDAVYV 238
>04_03_0459 +
16159015-16159771,16160251-16160365,16160478-16160844,
16160930-16161244,16161324-16161644,16161730-16161882
Length = 675
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 270 KQDCNIW*KDCCLCSCRRNLFLRQFCFHLLAQKA 371
KQ+C + C CSC + L + C H++A A
Sbjct: 102 KQECVLKANGTCHCSCAKPKLLHRPCTHVIAAAA 135
>10_06_0082 - 10467972-10468486,10468530-10468670,10469211-10469538
Length = 327
Score = 28.3 bits (60), Expect = 7.4
Identities = 10/32 (31%), Positives = 19/32 (59%)
Frame = +2
Query: 155 FPAYRYLHQRSEERDFLFNAVETLPCVKKKAD 250
+ Y+Y+HQ S +RD + N ++ + +K D
Sbjct: 101 YSGYKYIHQESSDRDIIDNRRHSISELMEKLD 132
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,800,939
Number of Sequences: 37544
Number of extensions: 452906
Number of successful extensions: 1011
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 976
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2127163404
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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