Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30118
(788 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0) 190 1e-48
SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0) 159 2e-41
SB_18028| Best HMM Match : Ribonuc_red_sm (HMM E-Value=1e-13) 105 5e-23
SB_42230| Best HMM Match : PFK (HMM E-Value=0) 31 0.80
SB_12957| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.3
SB_2786| Best HMM Match : Pox_A32 (HMM E-Value=0.11) 28 7.5
>SB_32960| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
Length = 991
Score = 190 bits (463), Expect = 1e-48
Identities = 114/248 (45%), Positives = 142/248 (57%), Gaps = 1/248 (0%)
Frame = +3
Query: 3 FIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIR 182
F+ HVLAFFAASDGIVNENLVE F QEVQ+ EARCFYGFQIA+EN+HSEMYSLLI++ I+
Sbjct: 121 FVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIESLIK 180
Query: 183 DPKREIFCLMRLRLFP-V*RRKQIGSTVDCKQDCNIW*KDCCLCSCRRNLFLRQFCFHLL 359
D ++ + P V ++ Q + + + F F
Sbjct: 181 DKAEKVNLFNAIETMPCVMKKAHWALNWINPQRASFGERIIAFAAVEGIFFSGSFAAIFW 240
Query: 360 AQKAGPYAGTYIQ**TYFQG*GSAYRFCLSDVPTLSSKAN*GMCPAYYKSAVVIEQEFLT 539
+K G G + G F L +K + K AVVIEQEFLT
Sbjct: 241 LKKRGLMPGLTFSNELISRDEGLHCDFACLMYKYLVNKPDEETVRGIIKDAVVIEQEFLT 300
Query: 540 DALPVRLLGMNCELMSQYIEFVADRLLVDLIGGKHYNTKNPFGLS*ILISAGKGKTNFFE 719
ALPV+L+GMNC LM QYIEFVADRLLV L K YN +NPF + + +GKTNF+E
Sbjct: 301 SALPVKLIGMNCALMRQYIEFVADRLLVALNCQKVYNVENPFDFMENI--SLEGKTNFYE 358
Query: 720 KKVGDYQK 743
K+VG+YQK
Sbjct: 359 KRVGEYQK 366
Score = 115 bits (276), Expect = 5e-26
Identities = 55/90 (61%), Positives = 65/90 (72%)
Frame = +1
Query: 238 EESRLGLQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISR 417
+++ L WI + A+FGERI+AFAAVE WLKKRGLMPGLTFSNELISR
Sbjct: 200 KKAHWALNWINPQRASFGERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISR 259
Query: 418 DEGLHTDFACLMFQHLVQKPTKECVLHIIK 507
DEGLH DFACLM+++LV KP +E V IIK
Sbjct: 260 DEGLHCDFACLMYKYLVNKPDEETVRGIIK 289
Score = 35.9 bits (79), Expect = 0.037
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2
Query: 191 ERDFLFNAVETLPCVKKKADW 253
E+ LFNA+ET+PCV KKA W
Sbjct: 184 EKVNLFNAIETMPCVMKKAHW 204
>SB_9251| Best HMM Match : Ribonuc_red_sm (HMM E-Value=0)
Length = 928
Score = 159 bits (386), Expect(2) = 2e-41
Identities = 96/210 (45%), Positives = 117/210 (55%), Gaps = 1/210 (0%)
Frame = +3
Query: 3 FIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIR 182
F+ HVLAFFAASDGIVNENLVE F QEVQ+ EARCFYGFQIA+EN+HSEMYSLLI++ I+
Sbjct: 138 FVSHVLAFFAASDGIVNENLVECFCQEVQIPEARCFYGFQIAIENIHSEMYSLLIESLIK 197
Query: 183 DPKREIFCLMRLRLFP-V*RRKQIGSTVDCKQDCNIW*KDCCLCSCRRNLFLRQFCFHLL 359
D ++ + P V ++ Q + + + F F
Sbjct: 198 DKAEKVNLFNAIETMPCVMKKAHWALNWINPQRASFGERIIAFAAVEGIFFSGSFAAIFW 257
Query: 360 AQKAGPYAGTYIQ**TYFQG*GSAYRFCLSDVPTLSSKAN*GMCPAYYKSAVVIEQEFLT 539
+K G G + G F L +K + K AVVIEQEFLT
Sbjct: 258 LKKRGLMPGLTFSNELISRDEGLHCDFACLMYKYLVNKPDEETVRGIIKDAVVIEQEFLT 317
Query: 540 DALPVRLLGMNCELMSQYIEFVADRLLVDL 629
ALPV+L+GMNC LM QYIEFVADRLLV L
Sbjct: 318 SALPVKLIGMNCALMRQYIEFVADRLLVAL 347
Score = 115 bits (276), Expect = 5e-26
Identities = 55/90 (61%), Positives = 65/90 (72%)
Frame = +1
Query: 238 EESRLGLQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELISR 417
+++ L WI + A+FGERI+AFAAVE WLKKRGLMPGLTFSNELISR
Sbjct: 217 KKAHWALNWINPQRASFGERIIAFAAVEGIFFSGSFAAIFWLKKRGLMPGLTFSNELISR 276
Query: 418 DEGLHTDFACLMFQHLVQKPTKECVLHIIK 507
DEGLH DFACLM+++LV KP +E V IIK
Sbjct: 277 DEGLHCDFACLMYKYLVNKPDEETVRGIIK 306
Score = 35.9 bits (79), Expect = 0.037
Identities = 14/21 (66%), Positives = 17/21 (80%)
Frame = +2
Query: 191 ERDFLFNAVETLPCVKKKADW 253
E+ LFNA+ET+PCV KKA W
Sbjct: 201 EKVNLFNAIETMPCVMKKAHW 221
Score = 28.7 bits (61), Expect(2) = 2e-41
Identities = 16/31 (51%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +3
Query: 645 YNTKNPFGLS*ILISAGKGKTNFFEK-KVGD 734
YN +NPF + + +GKTNFFEK K GD
Sbjct: 385 YNAENPFDFMENI--SLEGKTNFFEKRKAGD 413
>SB_18028| Best HMM Match : Ribonuc_red_sm (HMM E-Value=1e-13)
Length = 241
Score = 105 bits (251), Expect = 5e-23
Identities = 54/80 (67%), Positives = 62/80 (77%)
Frame = +3
Query: 504 KSAVVIEQEFLTDALPVRLLGMNCELMSQYIEFVADRLLVDLIGGKHYNTKNPFGLS*IL 683
K AVVIEQEFLT ALPV+L+GMNC LM QYIEFVADRLLV L K YN +NPF +
Sbjct: 146 KDAVVIEQEFLTSALPVKLIGMNCALMRQYIEFVADRLLVALNCQKVYNVENPFDFMENI 205
Query: 684 ISAGKGKTNFFEKKVGDYQK 743
+ +GKTNFFEK+VG+YQK
Sbjct: 206 --SLEGKTNFFEKRVGEYQK 223
Score = 80.2 bits (189), Expect = 2e-15
Identities = 36/49 (73%), Positives = 43/49 (87%)
Frame = +1
Query: 361 LKKRGLMPGLTFSNELISRDEGLHTDFACLMFQHLVQKPTKECVLHIIK 507
L+++GLMPGLTFSNELISRDEGLH DFACLM+++LV KP +E V IIK
Sbjct: 98 LQRKGLMPGLTFSNELISRDEGLHCDFACLMYKYLVNKPDEETVRGIIK 146
>SB_42230| Best HMM Match : PFK (HMM E-Value=0)
Length = 1103
Score = 31.5 bits (68), Expect = 0.80
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +1
Query: 445 CLMFQHLVQKPTKECVLHIIKVQ*SL-NKSFSQMRSL 552
CL +V+KP ECV +KVQ +L NK F ++ SL
Sbjct: 915 CLEGNKIVKKPLMECVEKTLKVQKALKNKKFDEVVSL 951
>SB_12957| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 149
Score = 29.1 bits (62), Expect = 4.3
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -3
Query: 156 NTFQNEHFPWLSGSHRNILPQ*LELLVKISQPSFHLQCHLKPQRKQGHA 10
NT FP L S + LPQ ++ +F LQ HL+P ++QG++
Sbjct: 33 NTLDPSIFPLLYQSPKKDLPQ---FPIRTVPGAFCLQYHLRPLKQQGYS 78
>SB_2786| Best HMM Match : Pox_A32 (HMM E-Value=0.11)
Length = 1182
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -2
Query: 130 MAIWKP*KHLASVT*TSCENLSTKFSFTMPSEAAKKA 20
+++W + L S+T CEN++ F PS+A KA
Sbjct: 954 ISVWVITQQLTSITKPFCENIAALVVFYTPSKADMKA 990
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,363,177
Number of Sequences: 59808
Number of extensions: 531528
Number of successful extensions: 1381
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1272
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1379
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2167838629
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -