Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30118
         (788 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical pr...   107   9e-24
U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical pr...    83   2e-16

>Z35637-2|CAA84688.1|  381|Caenorhabditis elegans Hypothetical
           protein C03C10.3 protein.
          Length = 381

 Score =  107 bits (257), Expect = 9e-24
 Identities = 50/61 (81%), Positives = 55/61 (90%)
 Frame = +3

Query: 3   FIKHVLAFFAASDGIVNENLVERFSQEVQVTEARCFYGFQIAMENVHSEMYSLLIDTYIR 182
           FI  +LAFFAASDGIVNENL ERFS EVQV+EAR FYGFQIA+EN+HSEMYS LI+TYIR
Sbjct: 118 FISRILAFFAASDGIVNENLCERFSNEVQVSEARFFYGFQIAIENIHSEMYSKLIETYIR 177

Query: 183 D 185
           D
Sbjct: 178 D 178



 Score =  106 bits (255), Expect = 2e-23
 Identities = 51/100 (51%), Positives = 68/100 (68%)
 Frame = +1

Query: 235 KEESRLGLQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELIS 414
           K+++   L+WI+ K A+F ER++AFAAVE            WLKKRGLMPGLT SNELIS
Sbjct: 196 KKKADWALRWISDKKASFAERLIAFAAVEGIFFSGSFASIFWLKKRGLMPGLTHSNELIS 255

Query: 415 RDEGLHTDFACLMFQHLVQKPTKECVLHIIKVQ*SLNKSF 534
           RDEGLH DFACL++  L +K T++ +  IIK   ++ + F
Sbjct: 256 RDEGLHRDFACLLYSKLQKKLTQQRIYDIIKDAVAIEQEF 295



 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 52/81 (64%), Positives = 61/81 (75%), Gaps = 1/81 (1%)
 Frame = +3

Query: 504 KSAVVIEQEFLTDALPVRLLGMNCELMSQYIEFVADRLLVDLIGGKHYNTKNPFG-LS*I 680
           K AV IEQEFLT+ALPV ++GMNC LMSQYIEFVAD LLV+L   K Y +KNPF  +  I
Sbjct: 286 KDAVAIEQEFLTEALPVDMIGMNCRLMSQYIEFVADHLLVELGCDKLYKSKNPFDFMENI 345

Query: 681 LISAGKGKTNFFEKKVGDYQK 743
            I    GKTNFFEK+V +YQ+
Sbjct: 346 SID---GKTNFFEKRVSEYQR 363



 Score = 32.3 bits (70), Expect = 0.41
 Identities = 13/21 (61%), Positives = 16/21 (76%)
 Frame = +2

Query: 191 ERDFLFNAVETLPCVKKKADW 253
           ER+ LFNAV+    +KKKADW
Sbjct: 181 ERNTLFNAVDEFEFIKKKADW 201


>U51997-5|AAG24065.1|  668|Caenorhabditis elegans Hypothetical
           protein F19G12.2 protein.
          Length = 668

 Score = 83.4 bits (197), Expect = 2e-16
 Identities = 39/78 (50%), Positives = 57/78 (73%)
 Frame = +3

Query: 510 AVVIEQEFLTDALPVRLLGMNCELMSQYIEFVADRLLVDLIGGKHYNTKNPFGLS*ILIS 689
           +V++EQ+F+ ++LP  L+GMN  +M +Y+EFVAD LL +L   K YNTKNPF     +  
Sbjct: 575 SVLVEQDFVRESLPTNLIGMNQHMMCKYVEFVADLLLEELGYSKRYNTKNPFDFMENI-- 632

Query: 690 AGKGKTNFFEKKVGDYQK 743
           + +GKTNFFEK+V +YQ+
Sbjct: 633 SIEGKTNFFEKRVSEYQR 650



 Score = 62.9 bits (146), Expect = 3e-10
 Identities = 30/53 (56%), Positives = 34/53 (64%)
 Frame = +1

Query: 256 LQWIASKTATFGERIVAFAAVEXXXXXXXXXXXXWLKKRGLMPGLTFSNELIS 414
           L+WI+   A F ER+ AFAAVE            WLKKRGL+PGLT SNELIS
Sbjct: 490 LRWISDHNAPFSERLAAFAAVEGIFFSSSFAAIFWLKKRGLLPGLTHSNELIS 542



 Score = 36.7 bits (81), Expect = 0.019
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +3

Query: 123 IAMENVHSEMYSLLIDTYIRD 185
           IA+EN+HSEMY+ L++ YIRD
Sbjct: 445 IAVENIHSEMYAKLLEAYIRD 465



 Score = 31.5 bits (68), Expect = 0.71
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +2

Query: 191 ERDFLFNAVETLPCVKKKADW 253
           ER+ LFNA+ T   +K KADW
Sbjct: 468 ERNILFNAITTFKFIKAKADW 488


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,937,688
Number of Sequences: 27780
Number of extensions: 413891
Number of successful extensions: 968
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1914239236
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)